The DOI matches its Crossref record; 147 of the 147 references it cites were found in a registry or an index.
Computer-Aided Drug Design and Drug Discovery: A Prospective Analysis
Open accessAbstract
In the dynamic landscape of drug discovery, Computer-Aided Drug Design (CADD) emerges as a transformative force, bridging the realms of biology and technology. This paper overviews CADDs historical evolution, categorization into structure-based and ligand-based approaches, and its crucial role in rationalizing and expediting drug discovery. As CADD advances, incorporating diverse biological data and ensuring data privacy become paramount. Challenges persist, demanding the optimization of algorithms and robust ethical frameworks. Integrating Machine Learning and Artificial Intelligence amplifies CADDs predictive capabilities, yet ethical considerations and scalability challenges linger. Collaborative efforts and global initiatives, exemplified by platforms like Open-Source Malaria, underscore the democratization of drug discovery. The convergence of CADD with personalized medicine offers tailored therapeutic solutions, though ethical dilemmas and accessibility concerns must be navigated. Emerging technologies like quantum computing, immersive technologies, and green chemistry promise to redefine the future of CADD. The trajectory of CADD, marked by rapid advancements, anticipates challenges in ensuring accuracy, addressing biases in AI, and incorporating sustainability metrics. This paper concludes by highlighting the need for proactive measures in navigating the ethical, technological, and educational frontiers of CADD to shape a healthier, brighter future in drug discovery.
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Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Trott, O., & Olson, A. J. (2010) · Journal of Computational Chemistry · doi:10.1002/jcc.21334 · Cited by 38,412
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
Morris, G. M., Huey, R., Lindstrom, W., Sanner, M. F., Belew, R. K., Goodsell, D. S., & Olson, A. J. (2009) · Journal of Computational Chemistry · doi:10.1002/jcc.21256 · Cited by 25,486
The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., et al. (2016) · Scientific Data · doi:10.1038/sdata.2016.18 · Cited by 18,423
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2001) · Advanced Drug Delivery Reviews · doi:10.1016/s0169-409x(00)00129-0 · Cited by 18,139
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (1997) · Advanced Drug Delivery Reviews · doi:10.1016/s0169-409x(96)00423-1 · Cited by 11,385
High-performance medicine: the convergence of human and artificial intelligence
Topol, E. J. (2019) · Nature Medicine · doi:10.1038/s41591-018-0300-7 · Cited by 10,450
GROMACS: A message-passing parallel molecular dynamics implementation
Berendsen, H. J. C., van der Spoel, D., & van Drunen, R. (1995) · Computer Physics Communications · doi:10.1016/0010-4655(95)00042-e · Cited by 10,405
Friesner, R. A., Banks, J. L., Murphy, R. B., Halgren, T. A., Klicic, J. J., Mainz, D. T., Repasky, M. P., Knoll, E. H., Shelley, M., Perry, J. K., et al. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm0306430 · Cited by 10,057
The Amber biomolecular simulation programs
Case, D. A., Cheatham, T. E., Darden, T., Gohlke, H., Luo, R., Merz, K. M., Onufriev, A., Simmerling, C., Wang, B., & Woods, R. J. (2005) · Journal of Computational Chemistry · doi:10.1002/jcc.20290 · Cited by 9,535
Research works printed but not linked: 23
- Johnson, 1995, Historical perspectives in drug discovery: The advent of computational tools, J. Drug Discov., 12, 5
- Patel, 2003, Modeling drug-receptor interactions: Advances and challenges, J. Med. Chem., 46, 2543
- Green, 2010, Structural biology and computational chemistry: A symbiotic relationship, Chem. Rev., 110, 5678
- Walker, 1997, Zanamivir: The making of a drug, Nat. Biotechnol., 15, 232
- Martinez, 2006, Computational strategies in drug design, Drug Discov. Today, 11, 149
- Kapoor, 2018, From empirical to rational drug discovery: The importance of CADD, Drug Des. Rev., 15, 345
- Thompson, 2004, Techniques in Computer-Aided Drug Design, Bioorganic Med. Chem., 12, 3101
- Leach, 2007, Molecular modeling: Principles and applications, J. Chem. Inf. Model., 47, 5
- Lin, Z., Akin, H., Rao, R., Hie, B., Zhu, Z., Lu, W., Smetanin, N., Verkuil, R., Kabeli, O., and Shmueli, Y. (2022). Language models of protein sequences at the scale of evolution enable accurate structure prediction. bioRxiv, 2020.
- Willett, 2006, Virtual screening using molecular docking, Drug Discov. Today Technol., 3, 229
- Raj, 2011, 3d QSAR studies in conjunction with k-nearest neighbor molecular field analysis (k-NN-MFA) on a series of substituted 2-phenyl-benzimidazole derivatives as an anti allergic agents, Dig. J. Nanomater. Biostructures, 6, 1811
- Ekins, 2007, In silico pharmacokinetics: ADME in drug discovery, Drug Discov. World, 8, 17
- Zhang, 2019, AI and its role in drug discovery, J. Drug Discov. Des., 5, 1
- Bishop, C.M. (2006). Pattern Recognition and Machine Learning, Springer.
- Harper, 2014, Recent advances in the discovery of small molecule inhibitors of hepatitis C virus, Annu. Rev. Pharmacol. Toxicol., 54, 317
- Rani, 2022, Modern drug discovery applications for the identification of novel candidates for COVID-19 infections, Ann. Med. Surg., 80, 104125, 10.1016/j.amsu.2022.104125 · doi:10.1016/j.amsu.2022.104125
- Bhardwaj, 2011, Open source drug discovery—A new paradigm of collaborative research in tuberculosis drug development, Tuberculosis, 91, 479
- Brownsword, R., and Goodwin, M. (2012). Law and the Technologies of the Twenty-First Century, Cambridge University Press. · doi:10.1017/cbo9781139047609
- Torrance, 2019, Patents and the Regress of Useful Arts, Columbia Sci. Technol. Law Rev., 10, 130
- Lyon, 2019, AI ethics in predictive modeling and precision medicine, J. Mol. Biol., 431, 4118
- Shultz, 2019, Considerations for designing and prioritizing computational drug discovery, SLAS Discov., 24, 468
- Monge, 2011, University–industry collaboration in drug discovery and developments: A matter of synergies, Drug Discov. Today, 16, 1106
- Vapnik, V. (2013). The Nature of Statistical Learning Theory, Springer.
Cited by
Advancing pharmaceutical research: A comprehensive review of cutting-edge tools and technologies
Chen, J., Lin, A., & Luo, P. (2024) · Current Pharmaceutical Analysis · doi:10.1016/j.cpan.2024.11.001 · Cited by 112
Niazi, S. K. (2025) · Pharmaceuticals · doi:10.3390/ph18091271 · Cited by 61
Self-citation
Metadata
- Authors
- Niazi, S. K., & Mariam, Z.
- Venue
- Pharmaceuticals
- Publisher
- MDPI AG
- Published
- 2023-12-22
- Volume
- 17
- Issue
- 1
- Pages
- 22
- ISSN
- 1424-8247 (ISSN-L)
- OpenAlex
- W4390114224
- Cited by
- 336
- References
- 147
- FWCI
- 44.22
- Type
- journal article
- Language
- en
- Open access
- gold
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