Advancing Eco-Sustainable Bioremediation for Hydrocarbon Contaminants: Challenges and Solutions
Open accessAbstract
In an era of rising population density and industrialization, the environment confronts growing challenges. Soil, agricultural land, and water bodies are becoming increasingly polluted by petroleum waste and hydrocarbons. While hydrocarbons are naturally present in crude oil, refining processes compound the complexity and toxicity of hydrocarbons. This is particularly evident in polycyclic aromatic hydrocarbons (PAHs) found in the air and soil, known for their carcinogenic, mutagenic, and teratogenic properties. In response, biodegradation emerges as an eco-friendly, cost-effective solution, especially in petroleum-contaminated settings. Biodiverse microbial communities play a pivotal role in managing hydrocarbon contamination, contingent on location, toxicity, and microbial activity. To optimize biodegradation, understanding its mechanisms is essential. This review delves into varied bioremediation techniques, degradation pathways, and the contributions of microbial activities to efficiently removing hydrocarbon pollutants. Recent research spotlights specific microorganisms like bacteria, microalgae, and fungi adept at hydrocarbon degradation, offering a contemporary perspective on petroleum hydrocarbon pollutant bioremediation. These microorganisms efficiently break down petroleum hydrocarbons, with enzymatic catalysis markedly accelerating pollutant breakdown compared to conventional methods. Given the intricate nature of hydrocarbon contamination, cooperative bacterial consortia are instrumental in effective cleanup, driven by specific genes guiding bacterial metabolism. For cost-effective and efficient removal from compromised environments, it is advisable to adopt an integrated approach that combines biostimulation and bioaugmentation.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
These microbes, often found in the aerobic zone of marine sediments, play a crucial role in the hydrocarbon-degrading community.
“These microbes, often found in the aerobic zone of marine sediments, play a crucial role in the hydrocarbon-degrading community [12].”
From Harnessing bacterial consortia for effective bioremediation: targeted removal of heavy metals, hydrocarbons, and persistent pollutants (2025) · cites this paper as [12]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Jaskulak, M., Grobelak, A., & Vandenbulcke, F. (2020) · Chemosphere · doi:10.1016/j.chemosphere.2020.126196 · Cited by 97 · see citing works
Flagged first, then by citations
Research works printed but not linked: 149
- Giri, K.; Rai, J. Bacterial Metabolism of Petroleum Hydrocarbons. Biotechnology 2014, 11, 73-93.
- Abdullah, S.R.S.; Al-Baldawi, I.A.; Almansoory, A.F.; Purwanti, I.F.; Al-Sbani, N.H.; Sharuddin, S.S.N. Plant-assisted remediation of hydrocarbons in water and soil: Application, mechanisms, challenges and opportunities. Chemosphere 2020, 247, 125932. [CrossRef] · DOI
- Logeshwaran, P.; Megharaj, M.; Chadalavada, S.; Bowman, M.; Naidu, R. Petroleum hydrocarbons (PH) in groundwater aquifers: An overview of environmental fate, toxicity, microbial degradation and risk-based remediation approaches. Environ. Technol. Innov. 2018, 10, 175-193. [CrossRef] · DOI
- Joutey, N.T.; Bahafid, W.; Sayel, H.; El Ghachtouli, N. Biodegradation: Involved microorganisms and genetically engineered microorganisms. Biodegrad.-Life Sci. 2013, 1, 289-320.
- Liu, S.-c.; Sun, S.-j.; Cui, P.; Ding, Y.-f. Molecular modification of fluoroquinolone-biodegrading enzymes based on molecular docking and homology modelling. Int. J. Environ. Res. Public Health 2019, 16, 3407. [CrossRef] [PubMed] · DOI
- Ossai, I.C.; Ahmed, A.; Hassan, A.; Hamid, F.S. Remediation of soil and water contaminated with petroleum hydrocarbon: A review. Environ. Technol. Innov. 2020, 17, 100526. [CrossRef] · DOI
- Poorsoleiman, M.S.; Hosseini, S.A.; Etminan, A.; Abtahi, H.; Koolivand, A. Bioremediation of Petroleum Hydrocarbons by using a two-step inoculation composting process scaled-up from a mineral-based medium: Effect of biostimulation of an indigenous bacterial strain. Waste Biomass Valorization 2021, 12, 2089-2096. [CrossRef] · DOI
- Radhakrishnan, A.; Balaganesh, P.; Vasudevan, M.; Natarajan, N.; Chauhan, A.; Arora, J.; Ranjan, A.; Rajput, V.D.; Sushkova, S.; Minkina, T. Bioremediation of Hydrocarbon Pollutants: Recent Promising Sustainable Approaches, Scope, and Challenges. Sustainability 2023, 15, 5847. [CrossRef] · DOI
- Lawal, A.T. Polycyclic aromatic hydrocarbons. A review. Cogent Environ. Sci. 2017, 3, 1339841. [CrossRef] · DOI
- Zhang, X.; Yang, L.; Zhang, H.; Xing, W.; Wang, Y.; Bai, P.; Zhang, L.; Hayakawa, K.; Toriba, A.; Wei, Y. Assessing approaches of human inhalation exposure to polycyclic aromatic hydrocarbons: A review. Int. J. Environ. Res. Public Health 2021, 18, 3124. [CrossRef] · DOI
- Mallah, M.A.; Changxing, L.; Mallah, M.A.; Noreen, S.; Liu, Y.; Saeed, M.; Xi, H.; Ahmed, B.; Feng, F.; Mirjat, A.A. Polycyclic aromatic hydrocarbon and its effects on human health: An overeview. Chemosphere 2022, 296, 133948. [CrossRef] · DOI
- Singh, S.; Kang, S.H.; Mulchandani, A.; Chen, W. Bioremediation: Environmental clean-up through pathway engineering. Curr. Opin. Biotechnol. 2008, 19, 437-444. [CrossRef] [PubMed] · DOI
- Lange, I.; Kotiukov, P.; Lebedeva, Y. Analyzing Physical-Mechanical and Hydrophysical Properties of Sandy Soils Exposed to Long-Term Hydrocarbon Contamination. Sustainability 2023, 15, 3599. [CrossRef] · DOI
- Mahjoubi, M.; Cappello, S.; Souissi, Y.; Jaouani, A.; Cherif, A. Microbial bioremediation of petroleum hydrocarbon-contaminated marine environments. Recent Insights Pet. Sci. Eng. 2018, 325, 325-350.
- Blenis, N.; Hue, N.; Maaz, T.M.; Kantar, M. Biochar production, modification, and its uses in soil remediation: A review. Sustainability 2023, 15, 3442. [CrossRef] · DOI
- Adams, G.O.; Fufeyin, P.T.; Okoro, S.E.; Ehinomen, I. Bioremediation, biostimulation and bioaugmention: A review. Int. J. Environ. Bioremediat. Biodegrad. 2015, 3, 28-39.
- Sayara, T.; Sánchez, A. Bioremediation of PAH-contaminated soils: Process enhancement through composting/compost. Appl. Sci. 2020, 10, 3684. [CrossRef] · DOI
- Saravanan, A.; Kumar, P.S.; Vo, D.-V.N.; Jeevanantham, S.; Karishma, S.; Yaashikaa, P. A review on catalytic-enzyme degradation of toxic environmental pollutants: Microbial enzymes. J. Hazard. Mater. 2021, 419, 126451. [CrossRef] · DOI
- Mousavi, S.M.; Hashemi, S.A.; Gholami, A.; Omidifar, N.; Zarei, M.; Bahrani, S.; Yousefi, K.; Chiang, W.-H.; Babapoor, A. Bioinorganic synthesis of polyrhodanine stabilized Fe 3 O 4 /Graphene oxide in microbial supernatant media for anticancer and antibacterial applications. Bioinorg. Chem. Appl. 2021, 2021, 9972664. [CrossRef] · DOI
- Azhdari, R.; Mousavi, S.M.; Hashemi, S.A.; Bahrani, S.; Ramakrishna, S. Decorated graphene with aluminum fumarate metal organic framework as a superior non-toxic agent for efficient removal of Congo Red dye from wastewater. J. Environ. Chem. Eng. 2019, 7, 103437. [CrossRef] · DOI
- Eze, M.O.; Hose, G.C.; George, S.C.; Daniel, R. Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany. AMB Express 2021, 11, 89. [CrossRef] [PubMed] · DOI
- Gayathiri, E.; Prakash, P.; Karmegam, N.; Varjani, S.; Awasthi, M.K.; Ravindran, B. Biosurfactants: Potential and eco-friendly material for sustainable agriculture and environmental safety-A review. Agronomy 2022, 12, 662. [CrossRef] · DOI
- Fathepure, B.Z. Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments. Front. Microbiol. 2014, 5, 173. [CrossRef] [PubMed] · DOI
- Mousavi, S.M.; Zarei, M.; Hashemi, S.A.; Ramakrishna, S.; Chiang, W.-H.; Lai, C.W.; Gholami, A. Gold nanostars-diagnosis, bioimaging and biomedical applications. Drug Metab. Rev. 2020, 52, 299-318. [CrossRef] · DOI
- Mohkam, M.; Rasoul-Amini, S.; Shokri, D.; Berenjian, A.; Rahimi, F.; Sadraeian, M.; Khalvati, B.; Gholami, A.; Ghasemi, Y. Characterization and in vitro probiotic assessment of potential indigenous Bacillus strains isolated from soil rhizosphere. Minerva Biotecnol. 2016, 28, 19-28.
- Lin, C.; Gan, L.; Chen, Z.-L. Biodegradation of naphthalene by strain Bacillus fusiformis (BFN). J. Hazard. Mater. 2010, 182, 771-777. [CrossRef] · DOI
- Varjani, S.J.; Upasani, V.N. A new look on factors affecting microbial degradation of petroleum hydrocarbon pollutants. Int. Biodeterior. Biodegrad. 2017, 120, 71-83. [CrossRef] · DOI
- Mahiudddin, M.; Fakhruddin, A. Degradation of phenol via meta cleavage pathway by Pseudomonas fluorescens PU1. Int. Sch. Res. Netw. 2012, 2012, 741820.
- Gholami, A.; Mohammadi, F.; Ghasemi, Y.; Omidifar, N.; Ebrahiminezhad, A. Antibacterial activity of SPIONs versus ferrous and ferric ions under aerobic and anaerobic conditions: A preliminary mechanism study. IET Nanobiotechnol. 2020, 14, 155-160. [CrossRef] · DOI
- Pandolfo, E.; Barra Caracciolo, A.; Rolando, L. Recent advances in bacterial degradation of hydrocarbons. Water 2023, 15, 375. [CrossRef] · DOI
- Varjani, S.J. Microbial degradation of petroleum hydrocarbons. Bioresour. Technol. 2017, 223, 277-286. [CrossRef] [PubMed] · DOI
- Huang, L.; Batterman, S.A. Multimedia model for polycyclic aromatic hydrocarbons (PAHs) and nitro-PAHs in Lake Michigan. Environ. Sci. Technol. 2014, 48, 13817-13825. [CrossRef] [PubMed] · DOI
- Ghosal, D.; Ghosh, S.; Dutta, T.K.; Ahn, Y. Current state of knowledge in microbial degradation of polycyclic aromatic hydrocar- bons (PAHs): A review. Front. Microbiol. 2016, 1, 1369. [CrossRef] [PubMed] · DOI
- Lebov, J.; Grieger, K.; Womack, D.; Zaccaro, D.; Whitehead, N.; Kowalcyk, B.; MacDonald, P.D. A framework for One Health research. One Health 2017, 3, 44-50. [CrossRef] · DOI
- Nzila, A. Current status of the degradation of aliphatic and aromatic petroleum hydrocarbons by thermophilic microbes and future perspectives. Int. J. Environ. Res. Public Health 2018, 15, 2782. [CrossRef] · DOI
- Salari, M.; Rahmanian, V.; Hashemi, S.A.; Chiang, W.-H.; Lai, C.W.; Mousavi, S.M.; Gholami, A. Bioremediation treatment of polyaromatic hydrocarbons for environmental sustainability. Water 2022, 14, 3980. [CrossRef] · DOI
- Premnath, N.; Mohanrasu, K.; Rao, R.G.R.; Dinesh, G.; Prakash, G.S.; Ananthi, V.; Ponnuchamy, K.; Muthusamy, G.; Arun, A. A crucial review on polycyclic aromatic Hydrocarbons-Environmental occurrence and strategies for microbial degradation. Chemosphere 2021, 280, 130608. [CrossRef] · DOI
- Eldos, H.I.; Zouari, N.; Saeed, S.; Al-Ghouti, M.A. Recent advances in the treatment of PAHs in the environment: Application of nanomaterial-based technologies. Arab. J. Chem. 2022, 15, 103918. [CrossRef] · DOI
- Khan, A.; Ahsan, A.; Farooq, M.A.; Naveed, M.; Li, H. Role of polycyclic aromatic hydrocarbons as EDCs in metabolic disorders. In Endocrine Disrupting Chemicals-Induced Metabolic Disorders and Treatment Strategies; Springer: Berlin/Heidelberg, Germany, 2021; pp. 323-341.
- Garay-Narváez, L.; Arim, M.; Flores, J.D.; Ramos-Jiliberto, R. The more polluted the environment, the more important biodiversity is for food web stability. Oikos 2013, 122, 1247-1253. [CrossRef] · DOI
- Ma, H.; Pu, S.; Liu, S.; Bai, Y.; Mandal, S.; Xing, B. Microplastics in aquatic environments: Toxicity to trigger ecological consequences. Environ. Pollut. 2020, 261, 114089. [CrossRef] · DOI
- Nagkirti, P.; Shaikh, A.; Vasudevan, G.; Paliwal, V.; Dhakephalkar, P. Bioremediation of terrestrial oil spills: Feasibility Assessment. In Optimization and applicability of bioprocesses; Springer: Berlin/Heidelberg, Germany, 2017; pp. 141-173.
- Samanta, S.K.; Singh, O.V.; Jain, R.K. Polycyclic aromatic hydrocarbons: Environmental pollution and bioremediation. TRENDS Biotechnol. 2002, 20, 243-248. [CrossRef] [PubMed] · DOI
- Kuppusamy, S.; Maddela, N.R.; Megharaj, M.; Venkateswarlu, K. Ecological Impacts of Total Petroleum Hydrocarbons. In Total Petroleum Hydrocarbons: Environmental Fate, Toxicity, and Remediation; Kuppusamy, S., Maddela, N.R., Megharaj, M., Venkateswarlu, K., Eds.; Springer International Publishing: Cham, Switzerland, 2020; pp. 95-138. [CrossRef] · DOI
- Devatha, C.; Vishnu Vishal, A.; Purna Chandra Rao, J. Investigation of physical and chemical characteristics on soil due to crude oil contamination and its remediation. Appl. Water Sci. 2019, 9, 1-10. [CrossRef] · DOI
- Kuppusamy, S.; Maddela, N.R.; Megharaj, M.; Venkateswarlu, K. Total petroleum hydrocarbons. In Environmental Fate, Toxicity, and Remediation; Springer: Berlin/Heidelberg, Germany, 2020.
- Truskewycz, A.; Gundry, T.D.; Khudur, L.S.; Kolobaric, A.; Taha, M.; Aburto-Medina, A.; Ball, A.S.; Shahsavari, E. Petroleum hydrocarbon contamination in terrestrial ecosystems-Fate and microbial responses. Molecules 2019, 24, 3400. [CrossRef] [PubMed] · DOI
- Qiao, X.; Zheng, B.; Li, X.; Zhao, X.; Dionysiou, D.D.; Liu, Y. Influencing factors and health risk assessment of polycyclic aromatic hydrocarbons in groundwater in China. J. Hazard. Mater. 2021, 402, 123419. [CrossRef] · DOI
- Abdel-Shafy, H.I.; Mansour, M.S. A review on polycyclic aromatic hydrocarbons: Source, environmental impact, effect on human health and remediation. Egypt. J. Pet. 2016, 25, 107-123. [CrossRef] · DOI
- Kebede, G.; Tafese, T.; Abda, E.M.; Kamaraj, M.; Assefa, F. Factors influencing the bacterial bioremediation of hydrocarbon contaminants in the soil: Mechanisms and impacts. J. Chem. 2021, 2021, 23362. [CrossRef] · DOI
- Gargouri, B.; Karray, F.; Mhiri, N.; Aloui, F.; Sayadi, S. Bioremediation of petroleum hydrocarbons-contaminated soil by bacterial consortium isolated from an industrial wastewater treatment plant. J. Chem. Technol. Biotechnol. 2014, 89, 978-987. [CrossRef] · DOI
- Yang, Y.; Zhang, Z.-W.; Liu, R.-X.; Ju, H.-Y.; Bian, X.-K.; Zhang, W.-Z.; Zhang, C.-B.; Yang, T.; Guo, B.; Xiao, C.-L. Research progress in bioremediation of petroleum pollution. Environ. Sci. Pollut. Res. 2021, 28, 46877-46893. [CrossRef] · DOI
- Ortega-Calvo, J.J. Strategies to Increase Bioavailability and Uptake of Hydrocarbons. In Cellular Ecophysiology of Microbe; Krell, T., Ed.; Springer International Publishing: Cham, Switzerland, 2017; pp. 1-12. [CrossRef] · DOI
- Haritash, A.; Kaushik, C. Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): A review. J. Hazard. Mater. 2009, 169, 1-15. [CrossRef] · DOI
- Phale, P.S.; Basu, A.; Majhi, P.D.; Deveryshetty, J.; Vamsee-Krishna, C.; Shrivastava, R. Metabolic diversity in bacterial degradation of aromatic compounds. Omics A J. Integr. Biol. 2007, 11, 252-279. [CrossRef] · DOI
- Abbasian, F.; Lockington, R.; Mallavarapu, M.; Naidu, R. A comprehensive review of aliphatic hydrocarbon biodegradation by bacteria. Appl. Biochem. Biotechnol. 2015, 176, 670-699. [CrossRef] [PubMed] · DOI
- Borgne, S.L. Introduction to Microorganisms Utilizing Nitrogen and Sulfur Containing Heterocyclic Hydrocarbons. In Handbook of Hydrocarbon and Lipid Microbiology; Timmis, K.N., Ed.; Springer: Berlin/Heidelberg, Germany, 2010; pp. 2123-2127. [CrossRef] · DOI
- Gunasekera, T.S.; Bowen, L.L.; Radwan, O.; Striebich, R.C.; Ruiz, O.N. Genomic and transcriptomic characterization revealed key adaptive mechanisms of Marinobacter hydrocarbonoclasticus NI9 for proliferation and degradation of jet fuel. Int. Biodeterior. Biodegrad. 2022, 175, 105502. [CrossRef] · DOI
- Conlon, R.; Wang, M.; Germaine, X.L.; Mali, R.; Dowling, D.; Germaine, K.J. Ecopiling: Beneficial Soil Bacteria, Plants, and Optimized Soil Conditions for Enhanced Remediation of Hydrocarbon Polluted Soil. In Good Microbes in Medicine, Food Production, Biotechnology, Bioremediation, and Agriculture; Wiley Online Library: Hoboken, NJ, USA, 2022; pp. 337-347.
- Abdel-Shafy, H.I.; Mansour, M.S.M. Microbial Degradation of Hydrocarbons in the Environment: An Overview. In Microbial Action on Hydrocarbons; Kumar, V., Kumar, M., Prasad, R., Eds.; Springer: Singapore, 2018; pp. 353-386. [CrossRef] · DOI
- Foght, J. Anaerobic biodegradation of aromatic hydrocarbons: Pathways and prospects. Microb. Physiol. 2008, 15, 93-120. [CrossRef] [PubMed] · DOI
- Ibrar, M.; Khan, S.; Hasan, F.; Yang, X. Biosurfactants and chemotaxis interplay in microbial consortium-based hydrocarbons degradation. Environ. Sci. Pollut. Res. 2022, 29, 24391-24410. [CrossRef] [PubMed] · DOI
- Hamouda, R.A.E.F.; Sorour, N.M.; Yeheia, D.S. Biodegradation of crude oil by Anabaena oryzae, Chlorella kessleri and its consortium under mixotrophic conditions. Int. Biodeterior. Biodegrad. 2016, 112, 128-134. [CrossRef] · DOI
- Safdel, M.; Anbaz, M.A.; Daryasafar, A.; Jamialahmadi, M. Microbial enhanced oil recovery, a critical review on worldwide implemented field trials in different countries. Renew. Sustain. Energy Rev. 2017, 74, 159-172. [CrossRef] · DOI
- Tiwari, S.; Tripathi, A.; Gaur, R. Bioremediation of plant refuges and xenobiotics. In Principles and Applications of Environmental Biotechnology for a Sustainable Future; Springer: Berlin/Heidelberg, Germany, 2017; pp. 85-142.
- Touliabah, H.E.-S.; El-Sheekh, M.M.; Ismail, M.M.; El-Kassas, H. A review of microalgae-and cyanobacteria-based biodegradation of organic pollutants. Molecules 2022, 27, 1141. [CrossRef] · DOI
- Karigar, C.S.; Rao, S.S. Role of microbial enzymes in the bioremediation of pollutants: A review. Enzym. Res 2011, 2011, 805187. [CrossRef] · DOI
- Sarsaiya, S.; Awasthi, S.K.; Jain, A.; Mishra, S.; Jia, Q.; Shu, F.; Li, J.; Duan, Y.; Singh, R.; Awasthi, M.K.; et al. Recent Developments in the Treatment of Petroleum Hydrocarbon and Oily Sludge from the Petroleum Industry. In Biological Processing of Solid Waste; CRC Press: Boca Raton, FL, USA, 2019; pp. 277-310. [CrossRef] · DOI
- Varner, P.M.; Gunsch, C.K. Properties affecting transfer and expression of degradative plasmids for the purpose of bioremediation. Biodegradation 2021, 32, 361-375. [CrossRef] · DOI
- Das, N.; Chandran, P. Microbial degradation of petroleum hydrocarbon contaminants: An overview. Biotechnol. Res. Int. 2011, 2011, 941810. [CrossRef] · DOI
- Liu, X.; Li, Z.; Zhang, C.; Tan, X.; Yang, X.; Wan, C.; Lee, D.-J. Enhancement of anaerobic degradation of petroleum hydrocarbons by electron intermediate: Performance and mechanism. Bioresour. Technol. 2020, 295, 122305. [CrossRef] [PubMed] · DOI
- Bahrani, S.; Hashemi, S.A.; Mousavi, S.M.; Azhdari, R. Zinc-based metal-organic frameworks as nontoxic and biodegradable platforms for biomedical applications: Review study. Drug Metab. Rev. 2019, 51, 356-377. [CrossRef] · DOI
- Mousavi, S.M.; Hashemi, S.A.; Kalashgrani, M.Y.; Gholami, A.; Omidifar, N.; Babapoor, A.; Vijayakameswara Rao, N.; Chiang, W.-H. Recent Advances in Plasma-Engineered Polymers for Biomarker-Based Viral Detection and Highly Multiplexed Analysis. Biosensors 2022, 12, 286. [CrossRef] [PubMed] · DOI
- Sakshi; Haritash, A.K. A comprehensive review of metabolic and genomic aspects of PAH-degradation. Arch. Microbiol. 2020, 202, 2033-2058. [CrossRef] [PubMed] · DOI · Paper page
- Parhamfar, M.; Abtahi, H.; Godini, K.; Saeedi, R.; Sartaj, M.; Villaseñor, J.; Coulon, F.; Kumar, V.; Soltanighias, T.; Ghaznavi-Rad, E. Biodegradation of heavy oily sludge by a two-step inoculation composting process using synergistic effect of indigenous isolated bacteria. Process Biochem. 2020, 91, 223-230. [CrossRef] · DOI
- Weelink, S.A.; Van Eekert, M.H.; Stams, A.J. Degradation of BTEX by anaerobic bacteria: Physiology and application. Rev. Environ. Sci. Bio/Technol. 2010, 9, 359-385. [CrossRef] · DOI
- Noh, S.-L.; Choi, J.-M.; An, Y.-J.; Park, S.-S.; Cho, K.-S. Anaerobic biodegradation of toluene coupled to sulfate reduction in oil-contaminated soils: Optimum environmental conditions for field applications. J. Environ. Sci. Health Part A 2003, 38, 1087-1097. [CrossRef] · DOI
- Purnomo, A.; Mauliddawati, V.; Khoirudin, M.; Yonda, A.; Nawfa, R.; Putra, S. Bio-decolorization and novel bio-transformation of methyl orange by brown-rot fungi. Int. J. Environ. Sci. Technol. 2019, 16, 7555-7564. [CrossRef] · DOI
- Haripriyan, U.; Gopinath, K.; Arun, J.; Govarthanan, M. Bioremediation of organic pollutants: A mini review on current and critical strategies for wastewater treatment. Arch. Microbiol. 2022, 204, 286. [CrossRef] · DOI
- Sharma, S.; Pandey, L.M. Biodegradation kinetics of binary mixture of hexadecane and phenanthrene by the bacterial microcon- sortium. Bioresour. Technol. 2022, 358, 127408. [CrossRef] · DOI
- Poorsoleiman, M.S.; Hosseini, S.A.; Etminan, A.; Abtahi, H.; Koolivand, A. Effect of two-step bioaugmentation of an indigenous bacterial strain isolated from oily waste sludge on petroleum hydrocarbons biodegradation: Scaling-up from a liquid mineral medium to a two-stage composting process. Environ. Technol. Innov. 2020, 17, 100558. [CrossRef] · DOI
- Yong, J.J.J.Y.; Chew, K.W.; Khoo, K.S.; Show, P.L.; Chang, J.-S. Prospects and development of algal-bacterial biotechnology in environmental management and protection. Biotechnol. Adv. 2021, 47, 107684. [CrossRef] [PubMed] · DOI
- Gupte, A.; Tripathi, A.; Patel, H.; Rudakiya, D.; Gupte, S. Bioremediation of polycyclic aromatic hydrocarbon (PAHs): A perspective. Open Biotechnol. J. 2016, 10, 363-378. [CrossRef] · DOI
- Jafari, A.; Zamankhan, P.; Mousavi, S.M.; Henttinen, K. Multiscale modeling of fluid turbulence and flocculation in fiber suspensions. J. Appl. Phys. 2006, 100, 034901. [CrossRef] · DOI
- Xu, D.; Zhang, K.; Li, B.-G.; Mbadinga, S.M.; Zhou, L.; Liu, J.-F.; Yang, S.-Z.; Gu, J.-D.; Mu, B.-Z. Simulation of in situ oil reservoir conditions in a laboratory bioreactor testing for methanogenic conversion of crude oil and analysis of the microbial community. Int. Biodeterior. Biodegrad. 2019, 136, 24-33. [CrossRef] · DOI
- Cruz, A.; Cavaleiro, A.J.; Paulo, A.M.; Louvado, A.; Alves, M.M.; Almeida, A.; Cunha, Â. Microbial remediation of organometals and oil hydrocarbons in the marine environment. In Marine Pollution and Microbial Remediation; Springer: Berlin/Heidelberg, Germany, 2017; pp. 41-66.
- Kuttiyathil, M.S.; Mohamed, M.M.; Al-Zuhair, S. Using microalgae for remediation of crude petroleum oil-water emulsions. Biotechnol. Prog. 2021, 37, e3098. [CrossRef] · DOI
- Deborah Gnana Selvam, A.; Thatheyus, A.J. Microbial Degradation of Petroleum Hydrocarbons: An Overview. In Microbial Action on Hydrocarbons; Kumar, V., Kumar, M., Prasad, R., Eds.; Springer: Singapore, 2018; pp. 485-503. [CrossRef] · DOI
- Gwak, J.-H.; Awala, S.I.; Nguyen, N.-L.; Yu, W.-J.; Yang, H.-Y.; von Bergen, M.; Jehmlich, N.; Kits, K.D.; Loy, A.; Dunfield, P.F. Sulfur and methane oxidation by a single microorganism. Proc. Natl. Acad. Sci. USA 2022, 119, e2114799119. [CrossRef] · DOI
- Gupta, G.; Kumar, V.; Pal, A. Microbial degradation of high molecular weight polycyclic aromatic hydrocarbons with emphasis on pyrene. Polycycl. Aromat. Compd. 2019, 39, 124-138. [CrossRef] · DOI
- Sho, M.; Hamel, C.; Greer, C.W. Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65. FEMS Microbiol. Ecol. 2004, 48, 209-220. [CrossRef] · DOI
- Peng, J.; Zhang, Y.; Su, J.; Qiu, Q.; Jia, Z.; Zhu, Y.-G. Bacterial communities predominant in the degradation of 13C4-4, 5, 9, 10-pyrene during composting. Bioresour. Technol. 2013, 143, 608-614. [CrossRef] · DOI
- Ruiz, O.N.; Radwan, O.; Striebich, R.C. GC-MS hydrocarbon degradation profile data of Pseudomonas frederiksbergensis SI8, a bacterium capable of degrading aromatics at low temperatures. Data Brief 2021, 35, 106864. [CrossRef] [PubMed] · DOI
- Posada-Baquero, R.; Jiménez-Volkerink, S.N.; García, J.L.; Vila, J.; Cantos, M.; Grifoll, M.; Ortega-Calvo, J.J. Rhizosphere-enhanced biosurfactant action on slowly desorbing PAHs in contaminated soil. Sci. Total Environ. 2020, 720, 137608. [CrossRef] [PubMed] · DOI
- Medić, A.; Lješević, M.; Inui, H.; Beškoski, V.; Kojić, I.; Stojanović, K.; Karadžić, I. Efficient biodegradation of petroleum n-alkanes and polycyclic aromatic hydrocarbons by polyextremophilic Pseudomonas aeruginosa san ai with multidegradative capacity. RSC Adv. 2020, 10, 14060-14070. [CrossRef] [PubMed] · DOI · Paper page
- Li, J.; Chen, W.; Zhou, W.; Wang, Y.; Deng, M.; Zhou, S. Synergistic degradation of pyrene by Pseudomonas aeruginosa PA06 and Achromobacter sp. AC15 with sodium citrate as the co-metabolic carbon source. Ecotoxicology 2021, 30, 1487-1498. [CrossRef] · DOI
- Rolando, L.; Vila, J.; Baquero, R.P.; Castilla-Alcantara, J.C.; Caracciolo, A.B.; Ortega-Calvo, J.-J. Impact of bacterial motility on biosorption and cometabolism of pyrene in a porous medium. Sci. Total Environ. 2020, 717, 137210. [CrossRef] 100. Imam, A.; Suman, S.K.; Kanaujia, P.K.; Ray, A. Biological machinery for polycyclic aromatic hydrocarbons degradation: A review. Bioresour. Technol. 2022, 343, 126121. [CrossRef] 101. · DOI · Paper page
- Song, X.; Xu, Y.; Li, G.; Zhang, Y.; Huang, T.; Hu, Z. Isolation, characterization of Rhodococcus sp. P14 capable of degrading high-molecular-weight polycyclic aromatic hydrocarbons and aliphatic hydrocarbons. Mar. Pollut. Bull. 2011, 62, 2122-2128. [CrossRef] 102. Fernández-López, C.; Posada-Baquero, R.; García, J.L.; Castilla-Alcantara, J.C.; Cantos, M.; Ortega-Calvo, J.J. Root-mediated bacterial accessibility and cometabolism of pyrene in soil. Sci. Total Environ. 2021, 760, 143408. [CrossRef] 103. Chebbi, A.; Hentati, D.; Zaghden, H.; Baccar, N.; Rezgui, F.; Chalbi, M.; Sayadi, S.; Chamkha, M. Polycyclic aromatic hydrocarbon degradation and biosurfactant production by a newly isolated Pseudomonas sp. strain from used motor oil-contaminated soil. Int. Biodeterior. Biodegrad. 2017, 122, 128-140. [CrossRef] 104. Elufisan, T.O.; Rodríguez-Luna, I.C.; Oyedara, O.O.; Sánchez-Varela, A.; Hernández-Mendoza, A.; Gonzalez, E.D.; Paz-González, A.D.; Muhammad, K.; Rivera, G.; Villalobos-Lopez, M.A. The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strain Stenotrophomonas sp. Pemsol isolated from Mexico. PeerJ 2020, 8, e8102. [CrossRef] 105. · DOI
- Ahmed, A.W.; Alzubaidi, F.S.; Hamza, S.J. Biodegradation of crude oil in contaminated water by local isolates of Enterobacter cloacae. Iraqi J. Sci. 2014, 55, 1025-1033. 106. Van Beilen, J.B.; Marín, M.M.; Smits, T.H.; Röthlisberger, M.; Franchini, A.G.; Witholt, B.; Rojo, F. Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ. Microbiol. 2004, 6, 264-273. [CrossRef] [PubMed] 107. · DOI
- Laczi, K.; Kis, Á.; Horváth, B.; Maróti, G.; Hegedüs, B.; Perei, K.; Rákhely, G. Metabolic responses of Rhodococcus erythropolis PR4 grown on diesel oil and various hydrocarbons. Appl. Microbiol. Biotechnol. 2015, 99, 9745-9759. [CrossRef] [PubMed] 108. · DOI
- Orro, A.; Cappelletti, M.; D'Ursi, P.; Milanesi, L.; Di Canito, A.; Zampolli, J.; Collina, E.; Decorosi, F.; Viti, C.; Fedi, S. Genome and phenotype microarray analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic determinants and metabolic abilities with environmental relevance. PLoS ONE 2015, 10, e0139467. [CrossRef] [PubMed] 109. · DOI
- Schuler, L.; Jouanneau, Y.; Ní Chadhain, S.M.; Meyer, C.; Pouli, M.; Zylstra, G.J.; Hols, P.; Agathos, S.N. Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz [a] anthracene. Appl. Microbiol. Biotechnol. 2009, 83, 465-475. [CrossRef] 110. Ní Chadhain, S.M.; Moritz, E.M.; Kim, E.; Zylstra, G.J. Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1. J. Ind. Microbiol. Biotechnol. 2007, 34, 605-613. [CrossRef] 111. Dudhagara, D.R.; Dave, B.P. Mycobacterium as polycyclic aromatic hydrocarbons (PAHs) degrader. Mycobacterium-Res. Dev. 2018, 1, 1-9. 112. Lo Piccolo, L.; De Pasquale, C.; Fodale, R.; Puglia, A.M.; Quatrini, P. Involvement of an alkane hydroxylase system of Gordonia sp. strain SoCg in degradation of solid n-alkanes. Appl. Environ. Microbiol. 2011, 77, 1204-1213. [CrossRef] 113. Throne-Holst, M.; Markussen, S.; Winnberg, A.; Ellingsen, T.E.; Kotlar, H.-K.; Zotchev, S.B. Utilization of n-alkanes by a newly isolated strain of Acinetobacter venetianus: The role of two AlkB-type alkane hydroxylases. Appl. Microbiol. Biotechnol. 2006, 72, 353-360. [CrossRef] 114. Banat, I.; Rahman, K.; Thahira-Rahman, J. Bioremediation of hydrocarbon pollution using biosurfactant producing oil degrading bacteria. WIT Trans. Ecol. Environ. 2002, 59, 221-230. 115. · DOI
- Chandra, S.; Sharma, R.; Singh, K.; Sharma, A. Application of bioremediation technology in the environment contaminated with petroleum hydrocarbon. Ann. Microbiol. 2013, 63, 417-431. [CrossRef] 116. Desai, A.; Vyas, P. Petroleum and Hydrocarbon Microbiology; Department of Microbiology, M. S. University of Baroda: Vadodara, India, 2008. 117. · DOI
- Wanapaisan, P.; Laothamteep, N.; Vejarano, F.; Chakraborty, J.; Shintani, M.; Muangchinda, C.; Morita, T.; Suzuki-Minakuchi, C.; Inoue, K.; Nojiri, H. Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium. J. Hazard. Mater. 2018, 342, 561-570. [CrossRef] 118. Ferraro, A.; Massini, G.; Miritana, V.M.; Panico, A.; Pontoni, L.; Race, M.; Rosa, S.; Signorini, A.; Fabbricino, M.; Pirozzi, F. Bioaugmentation strategy to enhance polycyclic aromatic hydrocarbons anaerobic biodegradation in contaminated soils. Chemosphere 2021, 275, 130091. [CrossRef] 119. Phulpoto, I.A.; Hu, B.; Wang, Y.; Ndayisenga, F.; Li, J.; Yu, Z. Effect of natural microbiome and culturable biosurfactants-producing bacterial consortia of freshwater lake on petroleum-hydrocarbon degradation. Sci. Total Environ. 2021, 751, 141720. [CrossRef] [PubMed] 120. Adebusoye, S.A.; Ilori, M.O.; Amund, O.O.; Teniola, O.D.; Olatope, S. Microbial degradation of petroleum hydrocarbons in a polluted tropical stream. World J. Microbiol. Biotechnol. 2007, 23, 1149-1159. [CrossRef] 121. Bacosa, H.; Suto, K.; Inoue, C. Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium. Int. Biodeterior. Biodegrad. 2010, 64, 702-710. [CrossRef] 122. Jamal, M.T. Enrichment of potential halophilic Marinobacter consortium for mineralization of petroleum hydrocarbons and also as oil reservoir indicator in Red Sea, Saudi Arabia. Polycycl. Aromat. Compd. 2022, 42, 400-411. [CrossRef] 123. Feng, L.; Jiang, X.; Huang, Y.; Wen, D.; Fu, T.; Fu, R. Petroleum hydrocarbon-contaminated soil bioremediation assisted by isolated bacterial consortium and sophorolipid. Environ. Pollut. 2021, 273, 116476. [CrossRef] 124. Teng, Y.; Wang, X.; Li, L.; Li, Z.; Luo, Y. Rhizobia and their bio-partners as novel drivers for functional remediation in contaminated soils. Front. Plant Sci. 2015, 6, 32. [CrossRef] 125. Vasilyeva, G.; Kondrashina, V.; Strijakova, E.; Ortega-Calvo, J.-J. Adsorptive bioremediation of soil highly contaminated with crude oil. Sci. Total Environ. 2020, 706, 135739. [CrossRef] 126. · DOI
- Fahid, M.; Arslan, M.; Shabir, G.; Younus, S.; Yasmeen, T.; Rizwan, M.; Siddique, K.; Ahmad, S.R.; Tahseen, R.; Iqbal, S. Phragmites australis in combination with hydrocarbons degrading bacteria is a suitable option for remediation of diesel-contaminated water in floating wetlands. Chemosphere 2020, 240, 124890. [CrossRef] [PubMed] 127. · DOI
- Arantza, S.-J.; Hiram, M.-R.; Erika, K.; Chávez-Avilés, M.N.; Valiente-Banuet, J.I.; Fierros-Romero, G. Bio-and phytoremediation: Plants and microbes to the rescue of heavy metal polluted soils. SN Appl. Sci. 2022, 4, 59. [CrossRef] 128. Fernández, N.V.; Marchelli, P.; Tenreiro, R.; Chaves, S.; Fontenla, S.B. Are the rhizosphere fungal communities of Nothofagus alpina established in two different environments influenced by plant genetic diversity? For. Ecol. Manag. 2020, 473, 118269. [CrossRef] 129. Al Farraj, D.A.; Hadibarata, T.; Elshikh, M.S.; Al Khulaifi, M.M.; Kristanti, R.A. Biotransformation and degradation pathway of pyrene by filamentous soil fungus Trichoderma sp. F03. Water Air Soil Pollut. 2020, 231, 1-9. [CrossRef] 130. Lee, H.; Jang, Y.; Choi, Y.-S.; Kim, M.-J.; Lee, J.; Lee, H.; Hong, J.-H.; Lee, Y.M.; Kim, G.-H.; Kim, J.-J. Biotechnological procedures to select white rot fungi for the degradation of PAHs. J. Microbiol. Methods 2014, 97, 56-62. [CrossRef] 131. Zhang, X.; Gao, G.; Wu, Z.; Wen, X.; Zhong, H.; Zhong, Z.; Bian, F.; Gai, X. Agroforestry alters the rhizosphere soil bacterial and fungal communities of moso bamboo plantations in subtropical China. Appl. Soil Ecol. 2019, 143, 192-200. [CrossRef] 132. Ravelet, C.; Krivobok, S.; Sage, L.; Steiman, R. Biodegradation of pyrene by sediment fungi. Chemosphere 2000, 40, 557-563. [CrossRef] 133. Aranda, E.; Godoy, P.; Reina, R.; Badia-Fabregat, M.; Rosell, M.; Marco-Urrea, E.; García-Romera, I. Isolation of Ascomycota fungi with capability to transform PAHs: Insights into the biodegradation mechanisms of Penicillium oxalicum. Int. Biodeterior. Biodegrad. 2017, 122, 141-150. [CrossRef] 134. Haritash, A.; Kaushik, C. Degradation of low molecular weight polycyclic aromatic hydrocarbons by microorganisms isolated from contaminated soil. Int. J. Environ. Sci. 2016, 6, 808-819. 135. · DOI
- Birolli, W.G.; Santos, D.d.A.; Alvarenga, N.; Garcia, A.C.; Romão, L.P.; Porto, A.L. Biodegradation of anthracene and several PAHs by the marine-derived fungus Cladosporium sp. CBMAI 1237. Mar. Pollut. Bull. 2018, 129, 525-533. [CrossRef] 136. Bharagava, R.N.; Chowdhary, P. Emerging and Eco-Friendly Approaches for Waste Management; Springer: Berlin/Heidelberg, Germany, 2019. 137. · DOI
- Lange, B.; Kremer, S.; Anke, H.; Sterner, O. Metabolism of pyrene by basidiomycetous fungi of the genera Crinipellis, Marasmius, and Marasmiellus. Can. J. Microbiol. 1996, 42, 1179-1183. [CrossRef] 138. Li, P.; Li, H.; Stagnitti, F.; Wang, X.; Zhang, H.; Gong, Z.; Liu, W.; Xiong, X.; Li, L.; Austin, C. Biodegradation of pyrene and phenanthrene in soil using immobilized fungi Fusarium sp. Bull. Environ. Contam. Toxicol. 2005, 2, 75. [CrossRef] [PubMed] 139. Khudhair, A.B.; Hadibarata, T.; Yusoff, A.R.M.; Teh, Z.C.; Adnan, L.A.; Kamyab, H. Pyrene metabolism by new species isolated from soil Rhizoctonia zeae SOL3. Water Air Soil Pollut. 2015, 226, 1-9. [CrossRef] 140. Vieira, G.A.; Magrini, M.J.; Bonugli-Santos, R.C.; Rodrigues, M.V.; Sette, L.D. Polycyclic aromatic hydrocarbons degradation by marine-derived basidiomycetes: Optimization of the degradation process. Braz. J. Microbiol. 2018, 49, 749-756. [CrossRef] 141. Lee, H.; Jang, Y.; Kim, J.M.; Kim, G.H.; Kim, J.J. White-rot fungus Merulius tremellosus KUC9161 identified as an effective degrader of polycyclic aromatic hydrocarbons. J. Basic Microbiol. 2013, 53, 195-199. [CrossRef] 142. Hadibarata, T.; Teh, Z.C. Optimization of pyrene degradation by white-rot fungus Pleurotus pulmonarius F043 and characteriza- tion of its metabolites. Bioprocess Biosyst. Eng. 2014, 37, 1679-1684. [CrossRef] 143. Wen, J.; Gao, D.; Zhang, B.; Liang, H. Co-metabolic degradation of pyrene by indigenous white-rot fungus Pseudotrametes gibbosa from the northeast China. Int. Biodeterior. Biodegrad. 2011, 65, 600-604. [CrossRef] 144. Elyamine, A.M.; Kan, J.; Meng, S.; Tao, P.; Wang, H.; Hu, Z. Aerobic and anaerobic bacterial and fungal degradation of pyrene: Mechanism pathway including biochemical reaction and catabolic genes. Int. J. Mol. Sci. 2021, 22, 8202. [CrossRef] 145. Mao, J.; Guan, W. Fungal degradation of polycyclic aromatic hydrocarbons (PAHs) by Scopulariopsis brevicaulis and its application in bioremediation of PAH-contaminated soil. Acta Agric. Scand. Sect. B-Soil Plant Sci. 2016, 66, 399-405. 146. · DOI
- Bishnoi, K.; Kumar, R.; Bishnoi, N.R. Biodegradation of Polycyclic Aromatic Hydrocarbons by White Rot Fungi Phanerochaete Chrysospo- rium in Sterile and Unsterile Soil; Elsevier: Amsterdam, The Netherlands, 2008. 147.
- Novotný, Č.; Svobodová, K.; Erbanová, P.; Cajthaml, T.; Kasinath, A.; Lang, E.; Šašek, V. Ligninolytic fungi in bioremediation: Extracellular enzyme production and degradation rate. Soil Biol. Biochem. 2004, 36, 1545-1551. [CrossRef] 148. Aydin, S.; Karaçay, H.A.; Shahi, A.; Gökçe, S.; Ince, B.; Ince, O. Aerobic and anaerobic fungal metabolism and Omics insights for increasing polycyclic aromatic hydrocarbons biodegradation. Fungal Biol. Rev. 2017, 31, 61-72. [CrossRef] 149. Ichinose, H. Cytochrome P 450 of wood-rotting basidiomycetes and biotechnological applications. Biotechnol. Appl. Biochem. 2013, 60, 71-81. [CrossRef] [PubMed] 150. · DOI
- Lladó, S.; Covino, S.; Solanas, A.; Viñas, M.; Petruccioli, M.; D'annibale, A. Comparative assessment of bioremediation approaches to highly recalcitrant PAH degradation in a real industrial polluted soil. J. Hazard. Mater. 2013, 248, 407-414. [CrossRef] 151. Mouhamadou, B.; Faure, M.; Sage, L.; Marçais, J.; Souard, F.; Geremia, R.A. Potential of autochthonous fungal strains isolated from contaminated soils for degradation of polychlorinated biphenyls. Fungal Biol. 2013, 117, 268-274. [CrossRef] [PubMed] 152. Dell'Anno, F.; Rastelli, E.; Sansone, C.; Brunet, C.; Ianora, A.; Dell'Anno, A. Bacteria, fungi and microalgae for the bioremediation of marine sediments contaminated by petroleum hydrocarbons in the omics era. Microorganisms 2021, 9, 1695. [CrossRef] [PubMed] 153. · DOI · Paper page
- Ugya, Y.A.; Hasan, D.u.B.; Tahir, S.M.; Imam, T.S.; Ari, H.A.; Hua, X. Microalgae biofilm cultured in nutrient-rich water as a tool for the phycoremediation of petroleum-contaminated water. Int. J. Phytoremediat. 2021, 23, 1175-1183. [CrossRef] 154. Özhan, K.; Miles, S.M.; Gao, H.; Bargu, S. Relative Phytoplankton growth responses to physically and chemically dispersed South Louisiana sweet crude oil. Environ. Monit. Assess. 2014, 186, 3941-3956. [CrossRef] 155. Znad, H.; Al Ketife, A.M.D.; Judd, S.; AlMomani, F.; Vuthaluru, H.B. Bioremediation and nutrient removal from wastewater by Chlorella vulgaris. Ecol. Eng. 2018, 110, 1-7. [CrossRef] 156. Xaaldi Kalhor, A.; Movafeghi, A.; Mohammadi-Nassab, A.D.; Abedi, E.; Bahrami, A. Potential of the green alga Chlorella vulgaris for biodegradation of crude oil hydrocarbons. Mar. Pollut. Bull. 2017, 123, 286-290. [CrossRef] 157. El-Sheekh, M.M.; Hamouda, R.A.; Nizam, A.A. Biodegradation of crude oil by Scenedesmus obliquus and Chlorella vulgaris growing under heterotrophic conditions. Int. Biodeterior. Biodegrad. 2013, 82, 67-72. [CrossRef] 158. Das, P.; AbdulQuadir, M.; Thaher, M.; Khan, S.; Chaudhary, A.K.; Alghasal, G.; Al-Jabri, H.M.S.J. Microalgal bioremediation of petroleum-derived low salinity and low pH produced water. J. Appl. Phycol. 2018, 31, 435-444. [CrossRef] 159. Lei, A.; Wong, Y.; Tam, N. Removal of pyrene by different microalgal species. Water Sci. Technol. 2002, 46, 195-201. [CrossRef] [PubMed] 160. Hong, Y.-W.; Yuan, D.-X.; Lin, Q.-M.; Yang, T.-L. Accumulation and biodegradation of phenanthrene and fluoranthene by the algae enriched from a mangrove aquatic ecosystem. Mar. Pollut. Bull. 2008, 56, 1400-1405. [CrossRef] [PubMed] 161. Ghasemi, Y.; Rasoul-Amini, S.; Fotooh-Abadi, E. The biotransformation, biodegradation, and bioremediation of organic com- pounds by microalgae 1. J. Phycol. 2011, 47, 969-980. [CrossRef] 162. Morales, A.R.; Paniagua-Michel, J. Bioremediation of hexadecane and diesel oil is enhanced by photosynthetically produced marine biosurfactants. J. Bioremediat. Biodegrad 2013, 1, 1-5. [CrossRef] 163. · DOI
- Ammar, S.H.; Khadim, H.J.; Mohamed, A.I. Cultivation of Nannochloropsis oculata and Isochrysis galbana microalgae in produced water for bioremediation and biomass production. Environ. Technol. Innov. 2018, 10, 132-142. [CrossRef] 164. · DOI
- Radice, R.P.; De Fabrizio, V.; Donadoni, A.; Scopa, A.; Martelli, G. Crude Oil Bioremediation: From Bacteria to Microalgae. Processes 2023, 11, 442. [CrossRef] 165. Gutierrez, T.; Rhodes, G.; Mishamandani, S.; Berry, D.; Whitman, W.B.; Nichols, P.D.; Semple, K.T.; Aitken, M.D. Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium. Appl. Environ. Microbiol. 2014, 80, 618-628. [CrossRef] 166. Chernikova, T.N.; Bargiela, R.; Toshchakov, S.V.; Shivaraman, V.; Lunev, E.A.; Yakimov, M.M.; Thomas, D.N.; Golyshin, P.N. Hydrocarbon-degrading bacteria Alcanivorax and Marinobacter associated with microalgae Pavlova lutheri and Nannochloropsis oculata. Front. Microbiol. 2020, 11, 572931. [CrossRef] 167. Ghodrati, M.; Kosari-Nasab, M.; Zarrini, G.; Movafeghi, A. Crude oil contamination enhances the lipoxygenase gene expression in the green microalga scenedesmus dimorphus. Biointerface Res. Appl. Chem. 2021, 11, 11431-11439. 168. · DOI
- SureshKumar, P.; Thomas, J.; Poornima, V. Structural insights on bioremediation of polycyclic aromatic hydrocarbons using microalgae: A modelling-based computational study. Environ. Monit. Assess. 2018, 190, 92. [CrossRef] [PubMed] 169. · DOI
- Sharma, B.; Shukla, P. Futuristic avenues of metabolic engineering techniques in bioremediation. Biotechnol. Appl. Biochem. 2020, 69, 51-60. [CrossRef] [PubMed] 170. · DOI
- Zadeh, B.S.; Esmaeili, H.; Foroutan, R. Cadmium(II) Removal from Aqueous Solution Using Microporous Eggshell: Kinetic and Equilibrium Studies. Indones. J. Chem. 2018, 18, 265. [CrossRef] 171. Li, X.; Li, H.; Qu, C. A Review of the Mechanism of Microbial Degradation of Petroleum Pollution. IOP Conf. Ser. Mater. Sci. Eng. 2019, 484, 012060. [CrossRef] 172. Mousavi, S.M.; Hashemi, S.A.; Bahrani, S.; Sadrmousavi-Dizaj, A.; Arjmand, O.; Omidifar, N.; Lai, C.W.; Chiang, W.-H.; Gholami, A. Bioinorganic Synthesis of Sodium Polytungstate/Polyoxometalate in Microbial Kombucha Media for Precise Detection of Doxorubicin. Bioinorg. Chem. Appl. 2022, 2022, 2265108. [CrossRef] [PubMed] 173. Shen, T.; Pi, Y.; Bao, M.; Xu, N.; Li, Y.; Lu, J. Biodegradation of different petroleum hydrocarbons by free and immobilized microbial consortia. Environ. Sci. Process. Impacts 2015, 17, 2022-2033. [CrossRef] 174. Pinheiro Pires, A.P.; Arauzo, J.; Fonts, I.; Domine, M.E.; Fernández Arroyo, A.; Garcia-Perez, M.E.; Montoya, J.; Chejne, F.; Pfromm, P.; Garcia-Perez, M. Challenges and Opportunities for Bio-oil Refining: A Review. Energy Fuels 2019, 33, 4683-4720. [CrossRef] 175. Hou, D.; Al-Tabbaa, A.; O'Connor, D.; Hu, Q.; Zhu, Y.-G.; Wang, L.; Kirkwood, N.; Ok, Y.S.; Tsang, D.C.; Bolan, N.S. Sustainable remediation and redevelopment of brownfield sites. Nat. Rev. Earth Environ. 2023, 4, 271-286. [CrossRef] 176. Saxena, G.; Kumar, V.; Shah, M.P. Bioremediation for Environmental Sustainability: Toxicity, Mechanisms of Contaminants Degradation, Detoxification and Challenges; Elsevier: Amsterdam, The Netherlands, 2020. 177. · DOI · Paper page
- Kafle, A.; Timilsina, A.; Gautam, A.; Adhikari, K.; Bhattarai, A.; Aryal, N. Phytoremediation: Mechanisms, plant selection and enhancement by natural and synthetic agents. Environ. Adv. 2022, 8, 100203. [CrossRef] 178. Lim, M.W.; Von Lau, E.; Poh, P.E. A comprehensive guide of remediation technologies for oil contaminated soil-Present works and future directions. Mar. Pollut. Bull. 2016, 109, 14-45. [CrossRef] 179. · DOI
- Xiang, L.; Harindintwali, J.D.; Wang, F.; Redmile-Gordon, M.; Chang, S.X.; Fu, Y.; He, C.; Muhoza, B.; Brahushi, F.; Bolan, N. Integrating biochar, bacteria, and plants for sustainable remediation of soils contaminated with organic pollutants. Environ. Sci. Technol. 2022, 56, 16546-16566. [CrossRef] [PubMed] 180. · DOI
- Meckenstock, R.U.; Boll, M.; Mouttaki, H.; Koelschbach, J.S.; Cunha Tarouco, P.; Weyrauch, P.; Dong, X.; Himmelberg, A.M. Anaerobic degradation of benzene and polycyclic aromatic hydrocarbons. Microb. Physiol. 2016, 26, 92-118. [CrossRef] [PubMed] 181. Okolafor, F.; Ekhaise, F.O. Microbial enzyme remediation of poly-aromatic hydrocarbon (PAH's): A review. J. Int. Environ. Appl. Sci. 2022, 17, 10-21. 182. Iranzo, M.; Sainz-Pardo, I.; Boluda, R.; Sanchez, J.; Mormeneo, S. The use of microorganisms in environmental remediation. Ann. Microbiol. 2001, 51, 135-144. 183. · DOI
- Graj, W.; Lisiecki, P.; Szulc, A.; Chrzanowski, Ł.; Wojtera-Kwiczor, J. Bioaugmentation with petroleum-degrading consortia has a selective growth-promoting impact on crop plants germinated in diesel oil-contaminated soil. Water Air Soil Pollut. 2013, 224, 1-15. [CrossRef] 184. El-Naas, M.H.; Acio, J.A.; El Telib, A.E. Aerobic biodegradation of BTEX: Progresses and prospects. J. Environ. Chem. Eng. 2014, 2, 1104-1122. [CrossRef] 185. Grover, R.; Burse, S.A.; Shankrit, S.; Aggarwal, A.; Kirty, K.; Narta, K.; Srivastav, R.; Ray, A.K.; Malik, G.; Vats, A. Myg1 exonuclease couples the nuclear and mitochondrial translational programs through RNA processing. Nucleic Acids Res. 2019, 47, 5852-5866. [CrossRef] 186. Li, J.; Yang, H. Polycyclic Aromatic Hydrocarbon Improves the Anaerobic Biodegradation of Benz [α] Anthracene in Sludge Via Boosting the Microbial Activity and Bioavailability. Pak. J. Zool. 2021, 53, 1-6. [CrossRef] 187. Oliveira, L.G.; Araujo, K.C.; Barreto, M.C.; Bastos, M.E.P.; Lemos, S.G.; Fragoso, W.D. Applications of chemometrics in oil spill studies. Microchem. J. 2021, 166, 106216. [CrossRef] 188. · DOI
- Tavares, T.S.; da Rocha, E.P.; Esteves Nogueira, F.G.; Torres, J.A.; Silva, M.C.; Kuca, K.; Ramalho, T.C. ∆-FeOOH as support for immobilization peroxidase: Optimization via a chemometric approach. Molecules 2020, 25, 259. [CrossRef] 189. Vasudevan, M.; Nambi, I.M.; Kumar, G.S. Scenario-based modelling of mass transfer mechanisms at a petroleum contaminated field site-numerical implications. J. Environ. Manag. 2016, 175, 9-19. [CrossRef] [PubMed] 190. · DOI
- Bezza, F.A.; Chirwa, E.M.N. Production and applications of lipopeptide biosurfactant for bioremediation and oil recovery by Bacillus subtilis CN2. Biochem. Eng. J. 2015, 101, 168-178. [CrossRef] 191. Chandankere, R.; Yao, J.; Cai, M.; Masakorala, K.; Jain, A.K.; Choi, M.M. Properties and characterization of biosurfactant in crude oil biodegradation by bacterium Bacillus methylotrophicus USTBa. Fuel 2014, 122, 140-148. [CrossRef] 192. · DOI
- Chirwa, E.M.; Mampholo, T.; Fayemiwo, O. Biosurfactants as demulsifying agents for oil recovery from oily sludge-performance evaluation. Water Sci. Technol. 2013, 67, 2875-2881. [CrossRef] 193. · DOI
- Bhanse, P.; Kumar, M.; Singh, L.; Awasthi, M.K.; Qureshi, A. Role of plant growth-promoting rhizobacteria in boosting the phytoremediation of stressed soils: Opportunities, challenges, and prospects. Chemosphere 2022, 303, 134954. [CrossRef] 194. · DOI
- Zabed, H.M.; Akter, S.; Yun, J.; Zhang, G.; Awad, F.N.; Qi, X.; Sahu, J. Recent advances in biological pretreatment of microalgae and lignocellulosic biomass for biofuel production. Renew. Sustain. Energy Rev. 2019, 105, 105-128. [CrossRef] 195. Alegbeleye, O.O.; Opeolu, B.O.; Jackson, V.A. Polycyclic aromatic hydrocarbons: A critical review of environmental occurrence and bioremediation. Environ. Manag. 2017, 60, 758-783. [CrossRef] 196. Kalashgrani, M.Y.; Harzand, F.V.; Javanmardi, N.; Nejad, F.F.; Rahmanian, V. Recent Advances in Multifunctional magnetic nano platform for Biomedical Applications: A mini review. Adv. Appl. NanoBio-Technol. 2022, 3, 31-37. 197. · DOI
- Lee, D.W.; Lee, H.; Lee, A.H.; Kwon, B.-O.; Khim, J.S.; Yim, U.H.; Kim, B.S.; Kim, J.-J. Microbial community composition and PAHs removal potential of indigenous bacteria in oil contaminated sediment of Taean coast, Korea. Environ. Pollut. 2018, 234, 503-512. [CrossRef] 198. Davidson, S.-L.; Niepa, T.H. Micro-technologies for assessing microbial dynamics in controlled environments. Front. Microbiol. 2022, 12, 745835. [CrossRef] 199. Amiard-Triquet, C.; Cossu-Leguille, C.; Mouneyrac, C. Biomarkers of defense, tolerance, and ecological consequences. Ecol. Biomark. Indic. Ecotoxicol. Eff. 2013, 2, 45-74. 200. Steinberg, C.E.; Steinberg, C.E. Activation of oxygen: Multipurpose tool. In Stress Ecology: Environmental Stress as Ecological Driving Force and Key Player in Evolution; Springer: Berlin/Heidelberg, Germany, 2012; pp. 7-45. 201. · DOI
- Fan, L.; Reynolds, D.; Liu, M.; Stark, M.; Kjelleberg, S.; Webster, N.S.; Thomas, T. Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts. Proc. Natl. Acad. Sci. USA 2012, 109, E1878-E1887. [CrossRef] [PubMed] 202. Liu, C.; Wang, W.; Wu, Y.; Zhou, Z.; Lai, Q.; Shao, Z. Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5. Environ. Microbiol. 2011, 13, 1168-1178. [CrossRef] 203. · DOI
- Kokol, V.; Doliška, A.; Eichlerová, I.; Baldrian, P.; Nerud, F. Decolorization of textile dyes by whole cultures of Ischnoderma resinosum and by purified laccase and Mn-peroxidase. Enzym. Microb. Technol. 2007, 40, 1673-1677. [CrossRef] 204. Gajić, G.; Mitrović, M.; Pavlović, P. Phytobial remediation by bacteria and fungi. In Assisted Phytoremediation; Elsevier: Amsterdam, The Netherlands, 2022; pp. 285-344. 205. Cabrera, M.Á.; Márquez, S.L.; Pérez-Donoso, J.M. Comparative genomic analysis of Antarctic pseudomonas isolates with 2, 4, 6-trinitrotoluene transformation capabilities reveals their unique features for xenobiotics degradation. Genes 2022, 13, 1354. [CrossRef] [PubMed] 206. · DOI
- Tapadar, S.; Tripathi, D.; Pandey, S.; Goswami, K.; Bhattacharjee, A.; Das, K.; Palwan, E.; Rani, M.; Kumar, A. Role of extremophiles and extremophilic proteins in industrial waste treatment. In Removal of Emerging Contaminants through Microbial Processes; Springer: Berlin/Heidelberg, Germany, 2021; pp. 217-235. 207.
- Kahng, H.-Y. Cellular responses of Pseudomonas sp. KK1 to two-ring polycyclic aromatic hydrocarbon, naphthalene. J. Microbiol. 2002, 40, 38-42. 208.
- Pham, M.D.; Lin, Y.-P.; Van Vuong, Q.; Nagababu, P.; Chang, B.T.-A.; Ng, K.Y.; Chen, C.-H.; Han, C.-C.; Chen, C.-H.; Li, M.S. Inactivation of the particulate methane monooxygenase (pMMO) in Methylococcus capsulatus (Bath) by acetylene. Biochim. Biophys. Acta (BBA)-Proteins Proteom. 2015, 1854, 1842-1852. [CrossRef] 209. Patil, T.; Pendse, A.; Aruna, K. Optimization of Urease Production by Bacillus megaterium Tara26 Isolated from Marble Quarry Sample and Its Application in Reduction of Water Hardness. Indian J. Appl. Res. 2020, 10, 50-57. 210. · DOI
- Goyal, M.; Kalra, K.; Sareen, V.; Soni, G. Xylanase production with xylan rich lignocellulosic wastes by a local soil isolate of Trichoderma viride. Braz. J. Microbiol. 2008, 39, 535-541. [CrossRef] 211. Pedroso, M.M.; Ely, F.; Mitić, N.; Carpenter, M.C.; Gahan, L.R.; Wilcox, D.E.; Larrabee, J.L.; Ollis, D.L.; Schenk, G. Comparative investigation of the reaction mechanisms of the organophosphate-degrading phosphotriesterases from Agrobacterium radiobacter (OpdA) and Pseudomonas diminuta (OPH). JBIC J. Biol. Inorg. Chem. 2014, 19, 1263-1275. [CrossRef] 212. · DOI
- Keong, C.Y.; Chin, T.C.; Umar, N.A.B.; Mustapha, N.M.; Mohamad, S. The Effects of a Powder of the Fruiting Body of Commercial Lingzhi or Reishi Medicinal Mushroom Ganoderma lucidum (W. Curt.: Fr.) P. Karts.,] on Hypercholesterolemic Rat Skin, Applied With a Topical Application of Benzo (a) pyrene. Int. J. Med. Mushrooms 2010, 12, 367-378. [CrossRef] 213. Khatoon, N.; Jamal, A.; Ali, M.I. Polymeric pollutant biodegradation through microbial oxidoreductase: A better strategy to safe environment. Int. J. Biol. Macromol. 2017, 105, 9-16. [CrossRef] [PubMed] 214. · DOI
- Dash, S.S.; Gummadi, S.N. Biotechnological approach to caffeine degradation: Current trends and perspectives. In Microorganisms in Sustainable Agriculture and Biotechnology; Springer: Berlin/Heidelberg, Germany, 2012; pp. 435-451. 215. Darwesh, O.M.; Matter, I.A.; Eida, M.F. Development of peroxidase enzyme immobilized magnetic nanoparticles for bioremedia- tion of textile wastewater dye. J. Environ. Chem. Eng. 2019, 7, 102805. [CrossRef] 216. Bhatt, P. Smart Bioremediation Technologies: Microbial Enzymes; Academic Press: Cambridge, MA, USA, 2019. 217. Van Beilen, J.B.; Funhoff, E.G. Alkane hydroxylases involved in microbial alkane degradation. Appl. Microbiol. Biotechnol. 2007, 74, 13-21. [CrossRef] [PubMed] 218. · DOI
- Kim, S.-J.; Kweon, O.; Jones, R.C.; Freeman, J.P.; Edmondson, R.D.; Cerniglia, C.E. Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J. Bacteriol. 2007, 189, 464-472. [CrossRef] 219. Kweon, O.; Kim, S.-J.; Freeman, J.P.; Song, J.; Baek, S.; Cerniglia, C.E. Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1. MBio 2010, 1, 10-1128. [CrossRef] [PubMed] 220. Kadri, T.; Rouissi, T.; Brar, S.K.; Cledon, M.; Sarma, S.; Verma, M. Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by fungal enzymes: A review. J. Environ. Sci. 2017, 51, 52-74. [CrossRef] 221. Li, L.; Liu, X.; Yang, W.; Xu, F.; Wang, W.; Feng, L.; Bartlam, M.; Wang, L.; Rao, Z. Crystal structure of long-chain alkane monooxygenase (LadA) in complex with coenzyme FMN: Unveiling the long-chain alkane hydroxylase. J. Mol. Biol. 2008, 376, 453-465. [CrossRef] 222. Ji, Y.; Mao, G.; Wang, Y.; Bartlam, M. Structural insights into diversity and n-alkane biodegradation mechanisms of alkane hydroxylases. Front. Microbiol. 2013, 4, 58. [CrossRef] 223. Wang, M.; Garrido-Sanz, D.; Sansegundo-Lobato, P.; Redondo-Nieto, M.; Conlon, R.; Martin, M.; Mali, R.; Liu, X.; Dowling, D.; Rivilla, R. Soil microbiome structure and function in ecopiles used to remediate petroleum-contaminated soil. Front. Environ. Sci. 2021, 9, 39. [CrossRef] 224. Kim, S.-J.; Kweon, O.; Cerniglia, C.E. Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways. Curr. Opin. Microbiol. 2009, 12, 301-309. [CrossRef] [PubMed] 225. · DOI
- Mallick, S.; Chatterjee, S.; Dutta, T.K. A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: Formation of trans-2, 3-dioxo-5-(2 -hydroxyphenyl)-pent-4-enoic acid. Microbiology 2007, 153, 2104-2115. [CrossRef] [PubMed] 226. · DOI
- Yuan, K.; Xie, X.; Wang, X.; Lin, L.; Yang, L.; Luan, T.; Chen, B. Transcriptional response of Mycobacterium sp. strain A1-PYR to multiple polycyclic aromatic hydrocarbon contaminations. Environ. Pollut. 2018, 243, 824-832. [CrossRef] [PubMed] 227. · DOI
- Kumari, S.; Regar, R.K.; Bajaj, A.; Ch, R.; Satyanarayana, G.N.V.; Mudiam, M.K.R.; Manickam, N. Simultaneous biodegradation of polyaromatic hydrocarbons by a Stenotrophomonas sp: Characterization of nid genes and effect of surfactants on degradation. Indian J. Microbiol. 2017, 57, 60-67. [CrossRef] [PubMed] 228. Li, D.; Yan, J.; Wang, L.; Zhang, Y.; Liu, D.; Geng, H.; Xiong, L. Characterization of the phthalate acid catabolic gene cluster in phthalate acid esters transforming bacterium-Gordonia sp. strain HS-NH1. Int. Biodeterior. Biodegrad. 2016, 106, 34-40. [CrossRef] 229. Stingley, R.L.; Brezna, B.; Khan, A.A.; Cerniglia, C.E. Novel organization of genes in a phthalate degradation operon of Mycobacterium vanbaalenii PYR-1. Microbiology 2004, 150, 3749-3761. [CrossRef] 230. Yunusa, Y.; Umar, Z. Effective microbial bioremediation via the multi-omics approach: An overview of trends, problems and prospects. UMYU J. Microbiol. Res. 2021, 6, 127-145. [CrossRef] 231. Fischer, A.; Manefield, M.; Bombach, P. Application of stable isotope tools for evaluating natural and stimulated biodegradation of organic pollutants in field studies. Curr. Opin. Biotechnol. 2016, 41, 99-107. [CrossRef] 232. Adelana, S. Summary of Isotopes in Contaminant Hydrogeology. In Water Encyclopedia. sl; John Wiley Sons Inc.: Hoboken, NJ, USA, 2005; pp. 1-12. 233. · DOI
- Aelion, C.M.; Höhener, P.; Hunkeler, D.; Aravena, R. Environmental Isotopes in Biodegradation and Bioremediation; CRC Press: Boca Raton, FL, USA, 2009. 234.
- Mishra, S.; Lin, Z.; Pang, S.; Zhang, W.; Bhatt, P.; Chen, S. Recent advanced technologies for the characterization of xenobiotic- degrading microorganisms and microbial communities. Front. Bioeng. Biotechnol. 2021, 9, 632059. [CrossRef] 235. · DOI
- Shahi, A.; Ince, B.; Aydin, S.; Ince, O. Assessment of the horizontal transfer of functional genes as a suitable approach for evaluation of the bioremediation potential of petroleum-contaminated sites: A mini-review. Appl. Microbiol. Biotechnol. 2017, 101, 4341-4348. [CrossRef] 236. Bhatt, P.; Sethi, K.; Gangola, S.; Bhandari, G.; Verma, A.; Adnan, M.; Singh, Y.; Chaube, S. Modeling and simulation of atrazine biodegradation in bacteria and its effect in other living systems. J. Biomol. Struct. Dyn. 2022, 40, 3285-3295. [CrossRef] [PubMed] 237. · DOI
- Chambon, J.C.; Bjerg, P.L.; Scheutz, C.; Bælum, J.; Jakobsen, R.; Binning, P.J. Review of reactive kinetic models describing reductive dechlorination of chlorinated ethenes in soil and groundwater. Biotechnol. Bioeng. 2013, 110, 1-23. [CrossRef] [PubMed] 238. · DOI
- Kotoky, R.; Rajkumari, J.; Pandey, P. The rhizosphere microbiome: Significance in rhizoremediation of polyaromatic hydrocarbon contaminated soil. J. Environ. Manag. 2018, 217, 858-870. [CrossRef] 243. Suneja, G.; Srivastav, R. Impact of Microbial Genome Sequencing Advancements in Understanding Extremophiles. In Extreme Environments; CRC Press: Boca Raton, FL, USA, 2021; pp. 330-342. 244. · DOI
- Staats, M.; Braster, M.; Röling, W.F. Molecular diversity and distribution of aromatic hydrocarbon-degrading anaerobes across a landfill leachate plume. Environ. Microbiol. 2011, 13, 1216-1227. [CrossRef] 245. · DOI
- Yaohua, G.; Ping, X.; Feng, J.; Keren, S. Co-immobilization of laccase and ABTS onto novel dual-functionalized cellulose beads for highly improved biodegradation of indole. J. Hazard. Mater. 2018, 365, 118-124. [CrossRef] 246. Li, Q.-S.; Ogawa, J.; Schmid, R.D.; Shimizu, S. Engineering cytochrome P450 BM-3 for oxidation of polycyclic aromatic hydrocar- bons. Appl. Environ. Microbiol. 2001, 67, 5735-5739. [CrossRef] 247. Megharaj, M.; Ramakrishnan, B.; Venkateswarlu, K.; Sethunathan, N.; Naidu, R. Bioremediation approaches for organic pollutants: A critical perspective. Environ. Int. 2011, 37, 1362-1375. [CrossRef] 248. · DOI
- Abtahi, H.; Parhamfar, M.; Saeedi, R.; Villasenor, J.; Sartaj, M.; Kumar, V.; Coulon, F.; Parhamfar, M.; Didehdar, M.; Koolivand, A. Effect of competition between petroleum-degrading bacteria and indigenous compost microorganisms on the efficiency of petroleum sludge bioremediation: Field application of mineral-based culture in the composting process. J. Environ. Manag. 2020, 258, 110013. [CrossRef] [PubMed] 249. · DOI
- Bilal, M.; Iqbal, H.M.; Shah, S.Z.H.; Hu, H.; Wang, W.; Zhang, X. Horseradish peroxidase-assisted approach to decolorize and detoxify dye pollutants in a packed bed bioreactor. J. Environ. Manag. 2016, 183, 836-842. [CrossRef] [PubMed] 250. · DOI
- Mishra, S.; Singh, S.N. Biodegradation of benzo (a) pyrene mediated by catabolic enzymes of bacteria. Int. J. Environ. Sci. Technol. 2014, 11, 1571-1580. [CrossRef] 251. Zhang, X.; Yu, T.; Li, X.; Yao, J.; Liu, W.; Chang, S.; Chen, Y. The fate and enhanced removal of polycyclic aromatic hydrocarbons in wastewater and sludge treatment system: A review. Crit. Rev. Environ. Sci. Technol. 2019, 49, 1425-1475. [CrossRef] 252. Sakshi; Singh, S.; Haritash, A. Polycyclic aromatic hydrocarbons: Soil pollution and remediation. Int. J. Environ. Sci. Technol. 2019, 16, 6489-6512. [CrossRef · DOI
Cited by
Sorted by citations
Qattan, S. Y. A. (2025) · Environmental Sciences Europe · doi:10.1186/s12302-025-01103-y · Cited by 109 · see citing works
- Authors
- Alaidaroos, B. A.
- Affiliations
- King Abdulaziz University (SA)
- Corresponding author
- Alaidaroos, Bothaina A.
- Venue
- Processes
- Publisher
- MDPI AG
- Published
- 2023-10-22
- Volume
- 11
- Issue
- 10
- Pages
- 3036
- ISSN
- 2227-9717 (ISSN-L)
- OpenAlex
- W4387859898
- Cited by
- 66
- References
- 1
- Citations by year
- 2026: 35 · 2025: 26 · 2024: 5
- FWCI
- 4.25
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Processes (publishedVersion, cc-by)
- Topics
- Physical Sciences › Environmental Science › Pollution › Microbial bioremediation and biosurfactants
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Steroid Chemistry and Biochemistry
- Physical Sciences › Environmental Science › Environmental Chemistry › Environmental Chemistry and Analysis
- Keywords
- bioremediation, hydrocarbon contamination, oil pollution, polycyclic aromatic hydrocarbons, biodegradation, microbial communities, biostimulation, bioaugmentation, bacterial consortium, microalgae, fungi, biodegradation enzymes, degradation pathways, soil and water contamination
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review