The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
Open accessAbstract
Genomic and metagenomic analyses are increasingly becoming commonplace in several areas of biological research, but recurrent specialized analyses are frequently reported as in-house scripts rarely available after publication. We describe the enveomics collection, a growing set of actively maintained scripts for several recurrent and specialized tasks in microbial genomics and metagenomics, and present a graphical user interface and several case studies. Our resource includes previously described as well as new algorithms such as Transformed-space Resampling In Biased Sets (TRIBS), a novel method to evaluate phylogenetic under- or over-dispersion in reference sets with strong phylogenetic bias. The enveomics collection is freely available under the terms of the Artistic License 2.0 at https://github.com/lmrodriguezr/enveomics and for online analysis at http://enve-omics.ce.gatech.edu
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Cited by
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Jain, C., Rodriguez-R, L. M., Phillippy, A. M., Konstantinidis, K. T., & Aluru, S. (2018) · Nature Communications · doi:10.1038/s41467-018-07641-9 · Cited by 5,748
Self-citationTeixeira, P., Tacão, M., Pureza, L., Gonçalves, J., Silva, A., Cruz-Schneider, M. P., & Henriques, I. (2020) · Environmental Pollution · doi:10.1016/j.envpol.2020.113913 · Cited by 67
A long-awaited taxogenomic investigation of the family Halomonadaceae
de la Haba, R. R., Arahal, D. R., Sánchez-Porro, C., Chuvochina, M., Wittouck, S., Hugenholtz, P., & Ventosa, A. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1293707 · Cited by 53
Hoover, R. L., Keffer, J. L., Polson, S. W., & Chan, C. S. (2023) · mSystems · doi:10.1128/msystems.00038-23 · Cited by 33
The potential of non-starter lactic acid bacteria from Cheddar cheese to colonise the gut
Leeuwendaal, N., Stanton, C., O'Toole, P. W., & Beresford, T. P. (2021) · Journal of Functional Foods · doi:10.1016/j.jff.2021.104425 · Cited by 14
Metadata
- Authors
- Rodriguez-R, L. M., & Konstantinidis, K. T.
- Publisher
- PeerJ
- Published
- 2016-03-27
- OpenAlex
- W2333870360
- Cited by
- 1,117
- References
- 1
- Type
- posted content
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
