Structure of the Calvin-Benson-Bassham sedoheptulose-1,7-bisphosphatase from the model microalga Chlamydomonas reinhardtii
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Abstract
The Calvin-Benson-Bassham cycle (CBBC) performs carbon fixation in photosynthetic organisms. Among the eleven enzymes that participate in the pathway, sedoheptulose-1,7-bisphosphatase (SBPase) is expressed in photo-autotrophs and catalyzes the hydrolysis of sedoheptulose-1,7-bisphosphate (SBP) to sedoheptulose-7-phosphate (S7P). SBPase, along with nine other enzymes in the CBBC, contributes to the regeneration of ribulose-1,5-bisphosphate, the carbon-fixing co-substrate used by ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). The metabolic role of SBPase is restricted to the CBBC, and a recent study revealed that the three-dimensional structure of SBPase from the moss Physcomitrium patens was found to be similar to that of fructose-1,6-bisphosphatase (FBPase), an enzyme involved in both CBBC and neoglucogenesis. In this study we report the first structure of an SBPase from a chlorophyte, the model unicellular green microalga Chlamydomonas reinhardtii . By combining experimental and computational structural analyses, we describe the topology, conformations, and quaternary structure of Chlamydomonas reinhardtii SBPase ( Cr SBPase). We identify active site residues and locate sites of redox- and phospho-post-translational modifications that contribute to enzymatic functions. Finally, we observe that Cr SBPase adopts distinct oligomeric states that may dynamically contribute to the control of its activity.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
Accurate structure prediction of biomolecular interactions with AlphaFold 3
Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., et al. (2024) · Nature · doi:10.1038/s41586-024-07487-w · Cited by 15,861 · see citing works
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- Authors
- Le Moigne, T., Santoni, M., Jomat, L., Lemaire, S. D., Zaffagnini, M., Chéron, N., & Henri, J.
- Affiliations
- Sorbonne Université, CNRS, Laboratoire de Biologie Computationnelle et Quantitative UMR 7238, Institut de Biologie Paris-Seine
- Centre National de la Recherche Scientifique (FR)
- University of Bologna (IT)
- Corresponding author
- Henri, Julien
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2025-04-01
- Volume
- 12
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC11961124
- OpenAlex
- W4380358443
- Cited by
- 2
- References
- 3
- Citations by year
- 2025: 2
- Type
- posted content
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- HAL (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Centre National de la Recherche Scientifique (INSB-D-2022-135)
- GENCI-IDRIS (2021-077156)
- Agence Nationale de la Recherche (ANR-19-CE11-0009)
- University of Bologna (ERASMUS+)
- Sorbonne University (ERASMUS+)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- sedoheptulose-1,7-bisphosphatase, Calvin cycle, Chlamydomonas reinhardtii, enzyme crystal structure, quaternary structure, oligomeric state, active site residues, ribulose-1,5-bisphosphate regeneration, CO2 fixation
- MeSH terms
- Models, Molecular, Phosphoric Monoester Hydrolases, Photosynthesis, Protein Conformation, Chlamydomonas reinhardtii, Crystallography, X-Ray
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