Cited by 3Microbial metabolism and enzyme functionTuberculosis Research and EpidemiologyMicrobial Natural Products and Biosynthesis

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MftG is crucial for ethanol metabolism of mycobacteria by linking mycofactocin oxidation to respiration

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Abstract

Mycofactocin is a redox cofactor essential for the alcohol metabolism of mycobacteria. While the biosynthesis of mycofactocin is well established, the gene mftG , which encodes an oxidoreductase of the glucose-methanol-choline superfamily, remained functionally uncharacterized. Here, we show that MftG enzymes are almost exclusively found in genomes containing mycofactocin biosynthetic genes and are present in 75% of organisms harboring these genes. Gene deletion experiments in Mycolicibacterium smegmatis demonstrated a growth defect of the ∆ mftG mutant on ethanol as a carbon source, accompanied by an arrest of cell division reminiscent of mild starvation. Investigation of carbon and cofactor metabolism implied a defect in mycofactocin reoxidation. Cell-free enzyme assays and respirometry using isolated cell membranes indicated that MftG acts as a mycofactocin dehydrogenase shuttling electrons toward the respiratory chain. Transcriptomics studies also indicated remodeling of redox metabolism to compensate for a shortage of redox equivalents. In conclusion, this work closes an important knowledge gap concerning the mycofactocin system and adds a new pathway to the intricate web of redox reactions governing the metabolism of mycobacteria.

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Research works printed but not linked: 58

  1. Adolph CR. 2021. Essentiality of Succinate Metabolism in Mycobacterium tuberculosis Thesis. University of Otago.
  2. Aleksenko, 2020, Phylogeny and structure of fatty acid photodecarboxylases and glucose-methanol-choline oxidoreductases, Catalysts, 10, 10.3390/catal10091072 · DOI
  3. Altschul, 1990, Basic local alignment search tool, J Mol Biol, 215, 403, 10.1016/S0022-2836(05)80360-2 · DOI · Paper page
  4. Anthony, 2001, Pyrroloquinoline quinone (PQQ) and quinoprotein enzymes, Antioxidants & Redox Signaling, 3, 757, 10.1089/15230860152664966 · DOI
  5. Ayikpoe, 2018, Mycofactocin biosynthesis proceeds through 3-Amino-5-[(p-hydroxyphenyl)methyl]-4,4-dimethyl-2-pyrrolidinone (AHDP); direct observation of MftE specificity toward MftA, Biochemistry, 57, 5379, 10.1021/acs.biochem.8b00816 · DOI
  6. Ayikpoe, 2019, Occurrence, function, and biosynthesis of mycofactocin, Applied Microbiology and Biotechnology, 103, 2903, 10.1007/s00253-019-09684-4 · DOI
  7. Ayikpoe, 2019, MftD Catalyzes the formation of a biologically active redox center in the biosynthesis of the ribosomally synthesized and post-translationally modified redox cofactor mycofactocin, Journal of the American Chemical Society, 141, 13582, 10.1021/jacs.9b06102 · DOI
  8. Berney, 2010, Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia, PLOS ONE, 5, 10.1371/journal.pone.0008614 · DOI · Paper page
  9. Bloch, 1956, Biochemical differentiation of Mycobacterium tuberculosis grown in vivo and in vitro, Journal of Bacteriology, 72, 132, 10.1128/jb.72.2.132-141.1956 · DOI · Paper page
  10. Bosch, 2021, Genome-wide gene expression tuning reveals diverse vulnerabilities of M. tuberculosis, Cell, 184, 4579, 10.1016/j.cell.2021.06.033 · DOI · Paper page
  11. Cavener, 1992, GMC oxidoreductases: a newly defined family of homologous proteins with diverse catalytic activities, Journal of Molecular Biology, 223, 811, 10.1016/0022-2836(92)90992-s · DOI
  12. Chen, 2018, fastp: an ultra-fast all-in-one FASTQ preprocessor, Bioinformatics, 34, i884, 10.1093/bioinformatics/bty560 · DOI · Paper page
  13. DeJesus, 2017, Comprehensive essentiality analysis of the Mycobacterium tuberculosis genome via saturating transposon mutagenesis, mBio, 8, 10.1128/mBio.02133-16 · DOI
  14. Dijkman, 2015, Structure-based enzyme tailoring of 5-hydroxymethylfurfural oxidase, ACS Catalysis, 5, 1833, 10.1021/acscatal.5b00031 · DOI
  15. Dubey, 2018, Methylotrophy in mycobacteria: dissection of the methanol metabolism pathway in Mycobacterium smegmatis, Journal of Bacteriology, 200, 10.1128/JB.00288-18 · DOI
  16. Dubey, 2019, Mycofactocin is essential for the establishment of methylotrophy in Mycobacterium smegmatis, Biochemical and Biophysical Research Communications, 516, 1073, 10.1016/j.bbrc.2019.07.008 · DOI
  17. Dubey, 2019, MnoSR Is a Bona Fide two-component system involved in methylotrophic metabolism in Mycobacterium smegmatis, Applied and Environmental Microbiology, 85, 10.1128/AEM.00535-19 · DOI
  18. Ellerhorst, 2022, S-Adenosylmethionine (SAM)-dependent methyltransferase MftM is responsible for methylation of the redox cofactor mycofactocin, ACS Chemical Biology, 17, 3207, 10.1021/acschembio.2c00659 · DOI
  19. Ferri, 2011, Review of glucose oxidases and glucose dehydrogenases: a bird’s eye view of glucose sensing enzymes, Journal of Diabetes Science and Technology, 5, 1068, 10.1177/193229681100500507 · DOI
  20. Gao, 2021, ggVennDiagram: an intuitive, easy-to-use, and highly customizable R Package to generate venn diagram, Frontiers in Genetics, 12, 10.3389/fgene.2021.706907 · DOI
  21. Goddard, 2018, UCSF ChimeraX: meeting modern challenges in visualization and analysis, Protein Sci, 27, 14, 10.1002/pro.3235 · DOI · Paper page
  22. Haft, 2011, Bioinformatic evidence for a widely distributed, ribosomally produced electron carrier precursor, its maturation proteins, and its nicotinoprotein redox partners, BMC Genomics, 12, 10.1186/1471-2164-12-21 · DOI
  23. Hahne, 2009, flowCore: a Bioconductor package for high throughput flow cytometry, BMC Bioinformatics, 10, 10.1186/1471-2105-10-106 · DOI
  24. Kana, 2001, Characterization of the cydAB-encoded cytochrome bd oxidase from Mycobacterium smegmatis, Journal of Bacteriology, 183, 7076, 10.1128/JB.183.24.7076-7086.2001 · DOI · Paper page
  25. Karlikowska, 2021, Biochemical and phenotypic characterisation of the Mycobacterium smegmatis transporter UspABC, Cell Surface, 7, 10.1016/j.tcsw.2021.100052 · DOI
  26. Katoh, 2002, MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform, Nucleic Acids Research, 30, 3059, 10.1093/nar/gkf436 · DOI · Paper page
  27. Khaliullin, 2017, Mechanistic elucidation of the mycofactocin-biosynthetic radical S-adenosylmethionine protein, MftC, The Journal of Biological Chemistry, 292, 13022, 10.1074/jbc.M117.795682 · DOI
  28. Koch, 2016, Crystal structure of alcohol oxidase from pichia pastoris, PLOS ONE, 11, 10.1371/journal.pone.0149846 · DOI
  29. Kpebe, 2023, An essential role of the reversible electron-bifurcating hydrogenase Hnd for ethanol oxidation in Solidesulfovibrio fructosivorans, Frontiers in Microbiology, 14, 10.3389/fmicb.2023.1139276 · DOI
  30. Krishnamoorthy, 2019, Mycofactocin is associated with ethanol metabolism in mycobacteria, mBio, 10, 10.1128/mBio.00190-19 · DOI
  31. Krishnamoorthy, 2021, Role of premycofactocin synthase in growth, microaerophilic adaptation, and metabolism of Mycobacterium tuberculosis, mBio, 12, 10.1128/mBio.01665-21 · DOI
  32. Kuru, 2019, Mechanisms of incorporation for D-amino acid probes that target peptidoglycan biosynthesis, ACS Chemical Biology, 14, 2745, 10.1021/acschembio.9b00664 · DOI
  33. Landfald, 1986, Choline-glycine betaine pathway confers a high level of osmotic tolerance in Escherichia coli, Journal of Bacteriology, 165, 849, 10.1128/jb.165.3.849-855.1986 · DOI
  34. Loos, 2015, Accelerated isotope fine structure calculation using pruned transition trees, Analytical Chemistry, 87, 5738, 10.1021/acs.analchem.5b00941 · DOI
  35. Love, 2014, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biology, 15, 10.1186/s13059-014-0550-8 · DOI · Paper page
  36. Mendauletova, 2022, Biosynthesis of the redox cofactor mycofactocin is controlled by the transcriptional regulator MftR and induced by long-chain acyl-CoA species, The Journal of Biological Chemistry, 298, 10.1016/j.jbc.2021.101474 · DOI
  37. Nikitushkin, 2020, Metabolic profiling of dormant Mycolicibacterium smegmatis cells’ reactivation reveals a gradual assembly of metabolic processes, Metabolomics, 16, 10.1007/s11306-020-1645-8 · DOI
  38. Nikitushkin, 2022, Shotgun proteomic profiling of dormant, “non-culturable” Mycobacterium tuberculosis, PLOS ONE, 17, 10.1371/journal.pone.0269847 · DOI
  39. Novo, 1999, Accurate flow cytometric membrane potential measurement in bacteria using diethyloxacarbocyanine and a ratiometric technique, Cytometry, 35, 55, 10.1002/(sici)1097-0320(19990101)35:1<55::aid-cyto8>3.0.co;2-2 · DOI
  40. Ofer, 2012, Ectoine biosynthesis in Mycobacterium smegmatis, Applied and Environmental Microbiology, 78, 7483, 10.1128/AEM.01318-12 · DOI
  41. Pacífico, 2018, Mycobacterial response to organic solvents and possible implications on cross-resistance with antimicrobial agents, Frontiers in Microbiology, 9, 10.3389/fmicb.2018.00961 · DOI
  42. Peña-Ortiz, 2020, Structure elucidation of the redox cofactor mycofactocin reveals oligo-glycosylation by MftF, Chemical Science, 11, 5182, 10.1039/d0sc01172j · DOI
  43. Peña-Ortiz, 2020, Impact of oxygen supply and scale up on Mycobacterium smegmatis cultivation and mycofactocin formation, Frontiers in Bioengineering and Biotechnology, 8, 10.3389/fbioe.2020.593781 · DOI
  44. Pluskal, 2010, MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data, BMC Bioinformatics, 11, 10.1186/1471-2105-11-395 · DOI
  45. Price, 2010, FastTree 2 – approximately maximum-likelihood trees for large alignments, PLOS ONE, 5, 10.1371/journal.pone.0009490 · DOI · Paper page
  46. Schindelin, 2012, Fiji: an open-source platform for biological-image analysis, Nature Methods, 9, 676, 10.1038/nmeth.2019 · DOI · Paper page
  47. Shimizu, 2024, A mycofactocin-associated dehydrogenase is essential for ethylene glycol metabolism by Rhodococcus jostii RHA1, Applied Microbiology and Biotechnology, 108, 10.1007/s00253-023-12966-7 · DOI
  48. Sützl, 2019, The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases, Biotechnology for Biofuels, 12, 10.1186/s13068-019-1457-0 · DOI
  49. Takahashi, 2015, Membrane-associated glucose-methanol-choline oxidoreductase family enzymes PhcC and PhcD are essential for enantioselective catabolism of dehydrodiconiferyl alcohol, Applied and Environmental Microbiology, 81, 8022, 10.1128/AEM.02391-15 · DOI
  50. Tan, 2015, Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation, Nature Communications, 6, 10.1038/ncomms8542 · DOI
  51. Tsukamura, 1966, Adansonian classification of mycobacteria, Journal of General Microbiology, 45, 253, 10.1099/00221287-45-2-253 · DOI
  52. Van, 2018, ggCyto: next generation open-source visualization software for cytometry, Bioinformatics, 34, 3951, 10.1093/bioinformatics/bty441 · DOI
  53. Varadi, 2022, AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models, Nucleic Acids Research, 50, D439, 10.1093/nar/gkab1061 · DOI · Paper page
  54. Vasimuddin M, Misra S, Li H, Aluru S. 2019. Efficient architecture-aware acceleration of BWA-MEM for multicore systems. 2019 IEEE International Parallel and Distributed Processing Symposium IPDPS. · DOI
  55. Wu, 2016, Mild nutrient starvation triggers the development of a small-cell survival morphotype in mycobacteria, Frontiers in Microbiology, 7, 10.3389/fmicb.2016.00947 · DOI
  56. Yakushi, 2010, Alcohol dehydrogenase of acetic acid bacteria: structure, mode of action and applications in biotechnology, Appl Microbiol Biotechnol, 86, 1257, 10.1007/s00253-010-2529-z · DOI
  57. Zimmermann, 2017, integration of metabolomics and transcriptomics reveals a complex diet of Mycobacterium tuberculosis during early macrophage infection, mSystems, 2, 10.1128/mSystems.00057-17 · DOI
  58. Graca AP, Klassert T, Siemers M, Lackner G. 2024. MftG is crucial for alcohol metabolism of mycobacteria by linking mycofactocin oxidation to respiration. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250373. GSE250373.

Metadata

Authors
Graça, A. P., Nikitushkin, V., Ellerhorst, M., Vilhena, C., Klassert, T. E., Starick, A., Siemers, M., Al-Jammal, W. K., Vilotijevic, I., Slevogt, H., Papenfort, K., & Lackner, G.
Affiliations
  • Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, Junior Research Group Synthetic Microbiology
  • Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) (DE)
  • Medizinische Hochschule Hannover (DE)
  • Friedrich Schiller University Jena (DE)
  • Friedrich Schiller University Jena, Institute of Organic Chemistry and Macromolecular Chemistry
Corresponding author
Lackner, Gerald
Venue
eLife
Published
2025-01-29
Volume
13
ISSN
2050-084X (ISSN-L)
OpenAlex
W4406929589
Cited by
3
References
4
Citations by year
2025: 3
FWCI
0.91
Type
journal article
Language
en
Open access
Locations
  • eLife (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
Funders
  • Carl-Zeiss-Stiftung
  • Deutscher Akademischer Austauschdienst
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial metabolism and enzyme function
  • Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
  • Life Sciences › Immunology and Microbiology › Applied Microbiology and Biotechnology › Microbial Natural Products and Biosynthesis
Keywords
alcohol metabolism, mycobacteria, glucose-methanol-choline oxidoreductase, redox cofactors, Mycolicibacterium smegmatis, redox metabolism, cell division arrest, carbon source utilization

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