Papin, Jason A.

A community-driven global reconstruction of human metabolism

Thiele, I., Swainston, N., Fleming, R. M. T., Hoppe, A., Sahoo, S., Aurich, M. K., Haraldsdottir, H., Mo, M. L., Rolfsson, O., Stobbe, M. D., et al. (2013) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 1,019

MEMOTE for standardized genome-scale metabolic model testing

Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., et al. (2020) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 509

Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions

Blais, E. M., Rawls, K. D., Dougherty, B. V., Li, Z. I., Kolling, G. L., Ye, P., Wallqvist, A., & Papin, J. A. (2017) · Nature Communications

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 182

Metabolic network modeling of microbial communities

Biggs, M. B., Medlock, G. L., Kolling, G. L., & Papin, J. A. (2015) · WIREs Systems Biology and Medicine

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 124

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M., et al. (2015) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 57

Improving reproducibility in computational biology research

Papin, J. A., Mac Gabhann, F., Sauro, H. M., Nickerson, D., & Rampadarath, A. (2020) · PLOS Computational Biology

Scientific Computing and Data ManagementResearch Data Management Practices

Cited by 42