Sonnenschein, Nikolaus

A community-driven global reconstruction of human metabolism

Thiele, I., Swainston, N., Fleming, R. M. T., Hoppe, A., Sahoo, S., Aurich, M. K., Haraldsdottir, H., Mo, M. L., Rolfsson, O., Stobbe, M. D., et al. (2013) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 1,019

MEMOTE for standardized genome-scale metabolic model testing

Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., et al. (2020) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 509

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Domenzain, I., Sánchez, B., Anton, M., Kerkhoven, E. J., Millán-Oropeza, A., Henry, C., Siewers, V., Morrissey, J. P., Sonnenschein, N., & Nielsen, J. (2021) · Nature Communications

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 158

Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies

Elsemman, I. E., Rodriguez Prado, A., Grigaitis, P., Garcia Albornoz, M., Harman, V., Holman, S. W., van Heerden, J., Bruggeman, F. J., Bisschops, M. M. M., Sonnenschein, N., et al. (2022) · Nature Communications

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 120

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M., et al. (2015) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 57

Bottom-up parameterization of enzyme rate constants: Reconciling inconsistent data

Zielinski, D. C., Matos, M. R. A., de Bree, J. E., Glass, K., Sonnenschein, N., & Palsson, B. O. (2024) · Metabolic Engineering Communications

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 6

Bottom-up parameterization of enzyme rate constants: Reconciling inconsistent data

Zielinski, D. C., Matos, M. R. A., de Bree, J. E., Glass, K., Sonnenschein, N., & Palsson, B. O. (2023) · Metabolic Engineering Communications

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 6