Baliga, Nitin S.

Cytoscape: A software Environment for integrated models of biomolecular interaction networks

Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003) · Genome Research

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 51,888

CTCF physically links cohesin to chromatin

Rubio, E. D., Reiss, D. J., Welcsh, P. L., Disteche, C. M., Filippova, G. N., Baliga, N. S., Aebersold, R., Ranish, J. A., & Krumm, A. (2008) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsDNA Repair Mechanisms

Cited by 511

The inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

Bonneau, R., Reiss, D. J., Shannon, P., Facciotti, M., Hood, L., Baliga, N. S., & Thorsson, V. (2006) · Genome Biology

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 510

In vivo commensal control of Clostridioides difficile virulence

Girinathan, B. P., DiBenedetto, N., Worley, J. N., Peltier, J., Arrieta-Ortiz, M. L., Immanuel, S. R. C., Lavin, R., Delaney, M. L., Cummins, C. K., Hoffman, M., et al. (2021) · Cell Host & Microbe

Clostridium difficile and Clostridium perfringens researchGut microbiota and health

Cited by 114

Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

Wang, Y., Gallagher, L. A., Andrade, P. A., Liu, A., Humphreys, I. R., Turkarslan, S., Cutler, K. J., Arrieta-Ortiz, M. L., Li, Y., Radey, M. C., et al. (2023) · Cell

Bacterial Genetics and BiotechnologyMicrobial Community Ecology and Physiology

Cited by 108

A refined genome‐scale reconstruction of Chlamydomonas metabolism provides a platform for systems‐level analyses

Imam, S., Schäuble, S., Valenzuela, J., López García de Lomana, A., Carter, W., Price, N. D., & Baliga, N. S. (2015) · The Plant Journal

Microbial Metabolic Engineering and BioproductionAlgal biology and biofuel production

Cited by 96

Path‐seq identifies an essential mycolate remodeling program for mycobacterial host adaptation

Peterson, E. J., Bailo, R., Rothchild, A. C., Arrieta‐Ortiz, M. L., Kaur, A., Pan, M., Mai, D., Abidi, A. A., Cooper, C., Aderem, A., et al. (2019) · Molecular Systems Biology

Tuberculosis Research and EpidemiologyMycobacterium research and diagnosis

Cited by 63