Kagaya, Yuki

NuFold: end-to-end approach for RNA tertiary structure prediction with flexible nucleobase center representation

Kagaya, Y., Zhang, Z., Ibtehaz, N., Wang, X., Nakamura, T., Punuru, P. D., & Kihara, D. (2025) · Nature Communications

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 70

Real-time structure search and structure classification for AlphaFold protein models

Aderinwale, T., Bharadwaj, V., Christoffer, C., Terashi, G., Zhang, Z., Jahandideh, R., Kagaya, Y., & Kihara, D. (2022) · Communications Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 61

Real-Time Structure Search and Structure Classification for AlphaFold Protein Models

Aderinwale, T., Bharadwaj, V., Christoffer, C., Terashi, G., Zhang, Z., Jahandideh, R., Kagaya, Y., & Kihara, D. (2021) · Communications Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 61

Distance-AF: Modifying Predicted Protein Structure Models by Alphafold2 with User-Specified Distance Constraints

Zhang, Y., Zhang, Z., Kagaya, Y., Terashi, G., Zhao, B., Xiong, Y., & Kihara, D. (2023) · Communications Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 20

Distance-AF improves predicted protein structure models by AlphaFold2 with user-specified distance constraints

Zhang, Y., Zhang, Z., Kagaya, Y., Terashi, G., Zhao, B., Xiong, Y., & Kihara, D. (2025) · Communications Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 19