Garrison, Erik

Semi-automated assembly of high-quality diploid human reference genomes

Jarvis, E. D., Formenti, G., Rhie, A., Guarracino, A., Yang, C., Wood, J., Tracey, A., Thibaud-Nissen, F., Vollger, M. R., Porubsky, D., et al. (2022) · Nature

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 209

Recombination between heterologous human acrocentric chromosomes

Guarracino, A., Buonaiuto, S., de Lima, L. G., Potapova, T., Rhie, A., Koren, S., Rubinstein, B., Fischer, C., Human Pangenome Reference Consortium, Abel, H. J., et al. (2023) · Nature

Chromosomal and Genetic VariationsGenomic variations and chromosomal abnormalities

Cited by 134

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

Martiniano, R., Garrison, E., Jones, E. R., Manica, A., & Durbin, R. (2020) · Genome Biology

Genomics and Phylogenetic StudiesForensic and Genetic Research

Cited by 128

Increased mutation and gene conversion within human segmental duplications

Vollger, M. R., Dishuck, P. C., Harvey, W. T., DeWitt, W. S., Guitart, X., Goldberg, M. E., Rozanski, A. N., Lucas, J., Asri, M., Human Pangenome Reference Consortium, et al. (2023) · Nature

Genomic variations and chromosomal abnormalitiesChromosomal and Genetic Variations

Cited by 104

Haplotype-aware graph indexes

Sirén, J., Garrison, E., Novak, A. M., Paten, B., & Durbin, R. (2020) · Bioinformatics

Algorithms and Data CompressionGenomics and Phylogenetic Studies

Cited by 92

Haplotype-aware pantranscriptome analyses using spliced pangenome graphs

Sibbesen, J. A., Eizenga, J. M., Novak, A. M., Sirén, J., Chang, X., Garrison, E., & Paten, B. (2023) · Nature Methods

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 83

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Chin, C.-S., Wagner, J., Zeng, Q., Garrison, E., Garg, S., Fungtammasan, A., Rautiainen, M., Aganezov, S., Kirsche, M., Zarate, S., et al. (2020) · Nature Communications

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 82

Optimal gap-affine alignment in O ( s ) space

Marco-Sola, S., Eizenga, J. M., Guarracino, A., Paten, B., Garrison, E., & Moreto, M. (2023) · Bioinformatics

Algorithms and Data CompressionGenomics and Phylogenetic Studies

Cited by 66

High-quality mouse reference genomes reveal the structural complexity of the murine protein-coding landscape

Helmy, M., Li, J. U., Yan, X. F., Meade, R. K., Anderson, E., Chen, P. B., Czechanski, A. M., Di Domenico, T., Flint, J., Garrison, E., et al. (2026) · Cell Genomics

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 2