Pertea, Mihaela

Genome sequence of the human malaria parasite Plasmodium falciparum

Gardner, M. J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R. W., Carlton, J. M., Pain, A., Nelson, K. E., Bowman, S., et al. (2002) · Nature

Malaria Research and ControlBird parasitology and diseases

Cited by 4,407

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Nierman, W. C., Pain, A., Anderson, M. J., Wortman, J. R., Kim, H. S., Arroyo, J., Berriman, M., Abe, K., Archer, D. B., Bermejo, C., et al. (2005) · Nature

Fungal and yeast genetics researchAntifungal resistance and susceptibility

Cited by 1,391

GFF Utilities: GffRead and GffCompare

Pertea, G., & Pertea, M. (2020) · F1000Research

Genomics and Phylogenetic StudiesGenetics, Bioinformatics, and Biomedical Research

Cited by 1,152

Defective HIV-1 proviruses are expressed and can Be recognized by cytotoxic T lymphocytes, which shape the proviral landscape

Pollack, R. A., Jones, R. B., Pertea, M., Bruner, K. M., Martin, A. R., Thomas, A. S., Capoferri, A. A., Beg, S. A., Huang, S.-H., Karandish, S., et al. (2017) · Cell Host & Microbe

HIV Research and TreatmentVirus-based gene therapy research

Cited by 370

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

Pertea, M., Shumate, A., Pertea, G., Varabyou, A., Breitwieser, F. P., Chang, Y.-C., Madugundu, A. K., Pandey, A., & Salzberg, S. L. (2018) · Genome Biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 335

Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms

Chang, T.-C., Pertea, M., Lee, S., Salzberg, S. L., & Mendell, J. T. (2015) · Genome Research

MicroRNA in disease regulationRNA Research and Splicing

Cited by 103

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

Varabyou, A., Sommer, M. J., Erdogdu, B., Shinder, I., Minkin, I., Chao, K.-H., Park, S., Heinz, J., Pockrandt, C., Shumate, A., et al. (2023) · Genome Biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 54

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

Varabyou, A., Sommer, M. J., Erdogdu, B., Shinder, I., Minkin, I., Chao, K.-H., Park, S., Heinz, J., Pockrandt, C., Shumate, A., et al. (2022) · Genome biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 54

Structure-guided isoform identification for the human transcriptome

Sommer, M. J., Cha, S., Varabyou, A., Rincon, N., Park, S., Minkin, I., Pertea, M., Steinegger, M., & Salzberg, S. L. (2022) · eLife

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 40

Highly accurate isoform identification for the human transcriptome

Sommer, M. J., Cha, S., Varabyou, A., Rincon, N., Park, S., Minkin, I., Pertea, M., Steinegger, M., & Salzberg, S. L. (2022) · eLife

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 40