Nepal, Chirag

Two independent transcription initiation codes overlap on vertebrate core promoters

Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X., Akalin, A., Suzuki, A. M., et al. (2014) · Nature

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 180

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

Nepal, C., Hadzhiev, Y., Previti, C., Haberle, V., Li, N., Takahashi, H., Suzuki, A. M. M., Sheng, Y., Abdelhamid, R. F., Anand, S., et al. (2013) · Genome Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 127

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Baranasic, D., Hörtenhuber, M., Balwierz, P. J., Zehnder, T., Mukarram, A. K., Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., et al. (2022) · Nature Genetics

Genomics and Chromatin DynamicsZebrafish Biomedical Research Applications

Cited by 101

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

Nepal, C., Hadzhiev, Y., Balwierz, P., Tarifeño-Saldivia, E., Cardenas, R., Wragg, J. W., Suzuki, A.-M., Carninci, P., Peers, B., Lenhard, B., et al. (2020) · Nature Communications

Genomics and Chromatin DynamicsRNA Research and Splicing

Cited by 52

Alternative promoters in CpG depleted regions are prevalently associated with epigenetic misregulation of liver cancer transcriptomes

Nepal, C., & Andersen, J. B. (2023) · Nature Communications

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 39

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs

Nepal, C., Coolen, M., Hadzhiev, Y., Cussigh, D., Mydel, P., Steen, V. M., Carninci, P., Andersen, J. B., Bally-Cuif, L., Müller, F., et al. (2016) · Nucleic Acids Research

MicroRNA in disease regulationGenomics and Chromatin Dynamics

Cited by 35