Wilkinson, Darren J.

Controlled vocabularies and semantics in systems biology

Courtot, M., Juty, N., Knüpfer, C., Waltemath, D., Zhukova, A., Dräger, A., Dumontier, M., Finney, A., Golebiewski, M., Hastings, J., et al. (2011) · Molecular Systems Biology

Biomedical Text Mining and OntologiesGene Regulatory Network Analysis

Cited by 316

Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo

Golightly, A., & Wilkinson, D. J. (2011) · Interface Focus

Markov Chains and Monte Carlo MethodsGene Regulatory Network Analysis

Cited by 282

The Systems Biology Markup Language (SBML): language specification for level 3 version 2 core release 2

Hucka, M., Bergmann, F. T., Chaouiya, C., Dräger, A., Hoops, S., Keating, S. M., König, M., Novère, N. L., Myers, C. J., Olivier, B. G., et al. (2019) · Journal of Integrative Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 258

Bayesian methods in bioinformatics and computational systems biology

Wilkinson, D. J. (2006) · Briefings in Bioinformatics

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 230

A Genomewide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae

Addinall, S. G., Downey, M., Yu, M., Zubko, M. K., Dewar, J., Leake, A., Hallinan, J., Shaw, O., James, K., Wilkinson, D. J., et al. (2008) · Genetics

Telomeres, Telomerase, and SenescenceGenetics, Aging, and Longevity in Model Organisms

Cited by 83

A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2in chromosome end protection

Greenall, A., Lei, G., Swan, D. C., James, K., Wang, L., Peters, H., Wipat, A., Wilkinson, D. J., & Lydall, D. (2008) · Genome Biology

Telomeres, Telomerase, and SenescenceDNA Repair Mechanisms

Cited by 23

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Hucka, M., Bergmann, F. T., Dräger, A., Hoops, S., Keating, S. M., Le Novère, N., Myers, C. J., Olivier, B. G., Sahle, S., Schaff, J. C., et al. (2015) · Journal of Integrative Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 16