Liu, Jun S.

Topological domains in mammalian genomes identified by analysis of chromatin interactions

Dixon, J. R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J. S., & Ren, B. (2012) · Nature

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 6,829

Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response

Jiang, P., Gu, S., Pan, D., Fu, J., Sahu, A., Hu, X., Li, Z., Traugh, N., Bu, X., Li, B., et al. (2018) · Nature Medicine

Cancer Immunotherapy and BiomarkersImmunotherapy and Immune Responses

Cited by 5,179

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

Li, W., Xu, H., Xiao, T., Cong, L., Love, M. I., Zhang, F., Irizarry, R. A., Liu, J. S., Brown, M., & Liu, X. S. (2014) · Genome Biology

CRISPR and Genetic EngineeringChromatin Remodeling and Cancer

Cited by 2,684

Genetics of rheumatoid arthritis contributes to biology and drug discovery

the RACI consortium, Okada, Y., the GARNET consortium, Wu, D., Trynka, G., Raj, T., Terao, C., Ikari, K., Kochi, Y., Ohmura, K., et al. (2014) · Nature

Rheumatoid Arthritis Research and TherapiesGenetic Associations and Epidemiology

Cited by 2,310

Sequence determinants of improved CRISPR sgRNA design

Xu, H., Xiao, T., Chen, C.-H., Li, W., Meyer, C. A., Wu, Q., Wu, D., Cong, L., Zhang, F., Liu, J. S., et al. (2015) · Genome Research

CRISPR and Genetic EngineeringRNA regulation and disease

Cited by 625

Parameter Expansion for Data Augmentation

Liu, J. S., & Wu, Y. N. (1999) · Journal of the American Statistical Association

Markov Chains and Monte Carlo MethodsStatistical Methods and Bayesian Inference

Cited by 356

Integrating regulatory motif discovery and genome-wide expression analysis

Conlon, E. M., Liu, X. S., Lieb, J. D., & Liu, J. S. (2003) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsFungal and yeast genetics research

Cited by 343

Landscape of tumor-infiltrating T cell repertoire of human cancers

Li, B., Li, T., Pignon, J.-C., Wang, B., Wang, J., Shukla, S. A., Dou, R., Chen, Q., Hodi, F. S., Choueiri, T. K., et al. (2016) · Nature Genetics

Cancer Immunotherapy and BiomarkersT-cell and B-cell Immunology

Cited by 306

Assumptions behind Intercoder Reliability Indices

Zhao, X., Liu, J. S., & Deng, K. (2013) · Annals of the International Communication Association

Reliability and Agreement in MeasurementPsychometric Methodologies and Testing

Cited by 113

Determinants of transcription factor regulatory range

Chen, C.-H., Zheng, R., Tokheim, C., Dong, X., Fan, J., Wan, C., Tang, Q., Brown, M., Liu, J. S., Meyer, C. A., et al. (2020) · Nature Communications

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 85

Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees

Hu, Z., Sackton, T. B., Edwards, S. V., & Liu, J. S. (2019) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 69

Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc

Thomas, G. W. C., Gemmell, P., Shakya, S. B., Hu, Z., Liu, J. S., Sackton, T. B., & Edwards, S. V. (2024) · Integrative And Comparative Biology

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 5