Nerli, Santrupti

Macromolecular modeling and design in Rosetta: recent methods and frameworks

Leman, J. K., Weitzner, B. D., Lewis, S. M., Adolf-Bryfogle, J., Alam, N., Alford, R. F., Aprahamian, M., Baker, D., Barlow, K. A., Barth, P., et al. (2020) · Nature Methods

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 888

Computational design of closely related proteins that adopt two well-defined but structurally divergent folds

Wei, K. Y., Moschidi, D., Bick, M. J., Nerli, S., McShan, A. C., Carter, L. P., Huang, P.-S., Fletcher, D. A., Sgourakis, N. G., Boyken, S. E., et al. (2020) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsChemical Synthesis and Analysis

Cited by 57

HLA3DB: comprehensive annotation of peptide/HLA complexes enables blind structure prediction of T cell epitopes

Gupta, S., Nerli, S., Kutti Kandy, S., Mersky, G. L., & Sgourakis, N. G. (2023) · Nature Communications

vaccines and immunoinformatics approachesProtein Structure and Dynamics

Cited by 26

HLA3DB: comprehensive annotation of peptide/HLA complexes enables blind structure prediction of T cell epitopes

Gupta, S., Nerli, S., Kandy, S. K., Mersky, G. L., & Sgourakis, N. G. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

vaccines and immunoinformatics approachesProtein Structure and Dynamics

Cited by 2