Stadler, Peter F.

ViennaRNA Package 2.0

Lorenz, R., Bernhart, S. H., Höner zu Siederdissen, C., Tafer, H., Flamm, C., Stadler, P. F., & Hofacker, I. L. (2011) · Algorithms for Molecular Biology

RNA and protein synthesis mechanismsGenomics and Phylogenetic Studies

Cited by 5,098

The repertoire of mutational signatures in human cancer

Alexandrov, L. B., Kim, J., Haradhvala, N. J., Huang, M. N., Tian Ng, A. W., Wu, Y., Boot, A., Covington, K. R., Gordenin, D. A., Bergstrom, E. N., et al. (2020) · Nature

Cancer Genomics and DiagnosticsChromatin Remodeling and Cancer

Cited by 3,496

Pan-cancer analysis of whole genomes

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S.-M., Aikata, H., et al. (2020) · Nature

Cancer Genomics and DiagnosticsChromatin Remodeling and Cancer

Cited by 3,064

The evolutionary history of 2,658 cancers

Gerstung, M., Jolly, C., Leshchiner, I., Dentro, S. C., Gonzalez, S., Rosebrock, D., Mitchell, T. J., Rubanova, Y., Anur, P., Yu, K., et al. (2020) · Nature

Cancer Genomics and DiagnosticsChromatin Remodeling and Cancer

Cited by 1,057

Comparative genomics reveals insights into avian genome evolution and adaptation

Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., et al. (2014) · Science

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 1,055

Prognostic value of tumor oxygenation in 397 head and neck tumors after primary radiation therapy. An international multi-center study

Nordsmark, M., Bentzen, S. M., Rudat, V., Brizel, D., Lartigau, E., Stadler, P., Becker, A., Adam, M., Molls, M., Dunst, J., et al. (2005) · Radiotherapy and Oncology

Head and Neck Cancer StudiesCancer, Hypoxia, and Metabolism

Cited by 953

Patterns of somatic structural variation in human cancer genomes

Li, Y., Roberts, N. D., Wala, J. A., Shapira, O., Schumacher, S. E., Kumar, K., Khurana, E., Waszak, S., Korbel, J. O., Haber, J. E., et al. (2020) · Nature

Cancer Genomics and DiagnosticsGenomic variations and chromosomal abnormalities

Cited by 867

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Cortés-Ciriano, I., Lee, J. J.-K., Xi, R., Jain, D., Jung, Y. L., Yang, L., Gordenin, D., Klimczak, L. J., Zhang, C.-Z., Pellman, D. S., et al. (2020) · Nature Genetics

Cancer Genomics and DiagnosticsGenomic variations and chromosomal abnormalities

Cited by 712

Interleukin-6–dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer

Löffler, D., Brocke-Heidrich, K., Pfeifer, G., Stocsits, C., Hackermüller, J., Kretzschmar, A. K., Burger, R., Gramatzki, M., Blumert, C., Bauer, K., et al. (2007) · Blood

Cytokine Signaling Pathways and InteractionsMultiple Myeloma Research and Treatments

Cited by 637

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Rodriguez-Martin, B., Alvarez, E. G., Baez-Ortega, A., Zamora, J., Supek, F., Demeulemeester, J., Santamarina, M., Ju, Y. S., Temes, J., Garcia-Souto, D., et al. (2020) · Nature Genetics

Genomic variations and chromosomal abnormalitiesCancer Genomics and Diagnostics

Cited by 451

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

Dalloul, R. A., Long, J. A., Zimin, A. V., Aslam, L., Beal, K., Ann Blomberg, L., Bouffard, P., Burt, D. W., Crasta, O., Crooijmans, R. P. M. A., et al. (2010) · PLoS Biology

Genomics and Phylogenetic StudiesGenetic and phenotypic traits in livestock

Cited by 416

Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks

Holdt, L. M., Hoffmann, S., Sass, K., Langenberger, D., Scholz, M., Krohn, K., Finstermeier, K., Stahringer, A., Wilfert, W., Beutner, F., et al. (2013) · PLoS Genetics

Cancer-related molecular mechanisms researchAtherosclerosis and Cardiovascular Diseases

Cited by 397

Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

Akdemir, K. C., Le, V. T., Chandran, S., Li, Y., Verhaak, R. G., Beroukhim, R., Campbell, P. J., Chin, L., Dixon, J. R., Futreal, P. A., et al. (2020) · Nature Genetics

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 283

An updated human snoRNAome

Jorjani, H., Kehr, S., Jedlinski, D. J., Gumienny, R., Hertel, J., Stadler, P. F., Zavolan, M., & Gruber, A. R. (2016) · Nucleic Acids Research

RNA modifications and cancerRNA and protein synthesis mechanisms

Cited by 257

RNA structures and folding: from conventional to new issues in structure predictions.

Schuster, P., Stadler, P. F., & Renner, A. (1997) · Current Opinion in Structural Biology

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 64

Enrichment and identification of small proteins in a simplified human gut microbiome

Petruschke, H., Anders, J., Stadler, P. F., Jehmlich, N., & von Bergen, M. (2020) · Journal of Proteomics

Advanced Proteomics Techniques and ApplicationsGut microbiota and health

Cited by 43

Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data

Andersen, J., Andersen, T., Flamm, C., Hanczyc, M., Merkle, D., & Stadler, P. (2013) · Entropy

Origins and Evolution of LifeRNA and protein synthesis mechanisms

Cited by 43

Mechanistic insights into G-protein coupling with an agonist-bound G-protein-coupled receptor

Batebi, H., Pérez-Hernández, G., Rahman, S. N., Lan, B., Kamprad, A., Shi, M., Speck, D., Tiemann, J. K. S., Guixà-González, R., Reinhardt, F., et al. (2024) · Nature Structural & Molecular Biology

Receptor Mechanisms and SignalingProtein Kinase Regulation and GTPase Signaling

Cited by 38

Error propagation in the hypercycle

Campos, P., Fontanari, J., & Stadler, P. (2000) · Physical Review E

Origins and Evolution of LifeCellular Automata and Applications

Cited by 25

SynBlast: Assisting the analysis of conserved synteny information

Lehmann, J., Stadler, P. F., & Prohaska, S. J. (2008) · BMC Bioinformatics

Genomics and Phylogenetic StudiesGenome Rearrangement Algorithms

Cited by 14

The influence of mutation on autocatalytic reaction networks

Stadler, P. F., & Nuño, J. C. (1994) · Mathematical Biosciences

Origins and Evolution of LifeEvolution and Genetic Dynamics

Cited by 12

Near intron pairs and the metazoan tree

Lehmann, J., Stadler, P. F., & Krauss, V. (2013) · Molecular Phylogenetics and Evolution

Genomics and Phylogenetic StudiesMarine Invertebrate Physiology and Ecology

Cited by 11