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Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

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Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish

Hiller, M., Agarwal, S., Notwell, J. H., Parikh, R., Guturu, H., Wenger, A. M., & Bejerano, G. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt557 · Cited by 72 · see citing works

Sex Reversal and Comparative Data Undermine the W Chromosome and Support Z-linked DMRT1 as the Regulator of Gonadal Sex Differentiation in Birds

Hirst, C. E., Major, A. T., Ayers, K. L., Brown, R. J., Mariette, M. M., Sackton, T. B., & Smith, C. A. (2017) · Endocrinology · doi:10.1210/en.2017-00316 · Cited by 72 · see citing works

The little skate genome and the evolutionary emergence of wing-like fins

Marlétaz, F., de la Calle-Mustienes, E., Acemel, R. D., Paliou, C., Naranjo, S., Martínez-García, P. M., Cases, I., Sleight, V. A., Hirschberger, C., Marcet-Houben, M., et al. (2023) · Nature · doi:10.1038/s41586-023-05868-1 · Cited by 71 · see citing works

Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary

Molnár, J., Nagy, T., Stéger, V., Tóth, G., Marincs, F., & Barta, E. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-761 · Cited by 71 · see citing works

The Genome Sequence of a Widespread Apex Predator, the Golden Eagle (Aquila chrysaetos)

Doyle, J. M., Katzner, T. E., Bloom, P. H., Ji, Y., Wijayawardena, B. K., & DeWoody, J. A. (2014) · PLoS ONE · doi:10.1371/journal.pone.0095599 · Cited by 70 · see citing works

Second-Generation Linkage Maps for the Pacific OysterCrassostrea gigasReveal Errors in Assembly of Genome Scaffolds

Hedgecock, D., Shin, G., Gracey, A. Y., Berg, D. V. D., & Samanta, M. P. (2015) · G3 Genes Genomes Genetics · doi:10.1534/g3.115.019570 · Cited by 68 · see citing works

All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing

Ripp, F., Krombholz, C. F., Liu, Y., Weber, M., Schäfer, A., Schmidt, B., Köppel, R., & Hankeln, T. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-639 · Cited by 66 · see citing works

Rampant Horizontal Transfer of SPIN Transposons in Squamate Reptiles

Gilbert, C., Hernandez, S. S., Flores-Benabib, J., Smith, E. N., & Feschotte, C. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr181 · Cited by 65 · see citing works

Low frequency of paleoviral infiltration across the avian phylogeny

Cui, J., Zhao, W., Huang, Z., Jarvis, E. D., Gilbert, M. T. P., Walker, P. J., Holmes, E. C., & Zhang, G. (2014) · Genome biology · doi:10.1186/preaccept-1458153167121123 · Cited by 64 · see citing works

Birds Generally Carry a Small Repertoire of Bitter Taste Receptor Genes

Wang, K., & Zhao, H. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv180 · Cited by 63 · see citing works

Using the canary genome to decipher the evolution of hormone-sensitive gene regulation in seasonal singing birds

Frankl‐Vilches, C., Kuhl, H., Werber, M., Klages, S., Kerick, M., Bakker, A., de Oliveira, E. H. C., Reusch, C., Capuano, F., Vowinckel, J., et al. (2015) · Genome biology · doi:10.1186/s13059-014-0578-9 · Cited by 63 · see citing works

Rapid molecular evolution across amniotes of the IIS/TOR network

McGaugh, S. E., Bronikowski, A. M., Kuo, C., Reding, D. M., Addis, E. A., Flagel, L., Janzen, F. J., & Schwartz, T. S. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1419659112 · Cited by 62 · see citing works

Systematic analysis and evolution of 5S ribosomal DNA in metazoans

Vierna, J., Wehner, S., zu Siederdissen, C. H., Martínez‐Lage, A., & Marz, M. (2013) · Heredity · doi:10.1038/hdy.2013.63 · Cited by 62 · see citing works

Rates of karyotypic evolution in Estrildid finches differ between island and continental clades: CHROMOSOME INVERSIONS IN FINCHES

Hooper, D. M., & Price, T. D. (2015) · Evolution · doi:10.1111/evo.12633 · Cited by 62 · see citing works

Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences

Xu, P., Li, J.-T., Li, Y., Cui, R., Wang, J., Wang, J., Zhang, Y., Zhao, Z., & Sun, X. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-188 · Cited by 60 · see citing works

Unexpected Diversity and Expression of Avian Endogenous Retroviruses

Bolisetty, M. T., Blomberg, J., Benachenhou, F., Sperber, G., & BEEMON, K. L. (2012) · mBio · doi:10.1128/mbio.00344-12 · Cited by 60 · see citing works

The design and cross‐population application of a genome‐wide SNP chip for the great tit Parus major

van Bers, N. E. M., Santure, A. W., van Oers, K., Cauwer, I. D., Dibbits, B. W., Mateman, A. C., Crooijmans, R. P. M. A., Sheldon, B. C., Visser, M. E., Groenen, M. A. M., et al. (2012) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2012.03141.x · Cited by 59 · see citing works

Transcriptome Analysis in Domesticated Species: Challenges and Strategies

Hekman, J. P., Johnson, J. L., & Kukekova, A. V. (2015) · Bioinformatics and Biology Insights · doi:10.4137/bbi.s29334 · Cited by 59 · see citing works

Next-generation sequencing strategies for characterizing the turkey genome

Dalloul, R. A., Zimin, A. V., Settlage, R. E., Kim, S., & Reed, K. M. (2014) · Poultry Science · doi:10.3382/ps.2013-03560 · Cited by 8 · see citing works

A new haplotype-resolved turkey genome to enable turkey genetics and genomics research

Barros, C. P., Derks, M. F. L., Mohr, J. S., Wood, B. J., Crooijmans, R. P. M. A., Megens, H., Bink, M. C. A. M., & Groenen, M. A. M. (2022) · GigaScience · doi:10.1093/gigascience/giad051 · Cited by 15 · see citing works

Poultry Genome Sequences: Progress and Outstanding Challenges

Dodgson, J. B., Delany, M. E., & Cheng, H. H. (2011) · Cytogenetic and Genome Research · doi:10.1159/000324413 · Cited by 38 · see citing works

Development and characterization of expressed sequence tags for the turkey (Meleagris gallopavo) genome and comparative sequence analysis with other birds

Smith, E., Shi, L., Drummond, P. B., Rodríguez, L. E., Hamilton, R., Powell, E., Nahashon, S. N., Ramlal, S., Smith, G., & Foster, J. (2000) · Animal Genetics · doi:10.1046/j.1365-2052.2000.00590.x · Cited by 33 · see citing works

GENOME COMPARATIVE STUDIES IN THE Phasianidae FAMILY PART II. INTERSPECIFIC AMPLIFICATION IN THE FAMILY Phasianidae ON THE EXAMPLE OF DOMESTIC CHICKEN (Gallus gallus domesticus) AND WILD TURKEY (Meleagris gallopavo)

Gruszczyńska, J., GRZEGRZÓŁKA, B., & MORAWSKA, A. (2019) · Folia Pomeranae Universitatis Technologiae Stetinensis Agricultura Alimentaria Piscaria et Zootechnica · doi:10.21005/aapz2019.49.1.08