Karr, Jonathan

A Whole-Cell Computational Model Predicts Phenotype from Genotype

Karr, J. R., Sanghvi, J. C., Macklin, D. N., Gutschow, M. V., Jacobs, J. M., Bolival, B., Assad-Garcia, N., Glass, J. I., & Covert, M. W. (2012) · Cell

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 1,300

Building structural models of a whole mycoplasma cell

Maritan, M., Autin, L., Karr, J., Covert, M. W., Olson, A. J., & Goodsell, D. S. (2022) · Journal of Molecular Biology

Protein Structure and DynamicsRNA and protein synthesis mechanisms

Cited by 75

A blueprint for human whole-cell modeling

Szigeti, B., Roth, Y. D., Sekar, J. A. P., Goldberg, A. P., Pochiraju, S. C., & Karr, J. R. (2018) · Current Opinion in Systems Biology

Gene Regulatory Network AnalysisBioinformatics and Genomic Networks

Cited by 72

Best Practices for Making Reproducible Biochemical Models

Porubsky, V. L., Goldberg, A. P., Rampadarath, A. K., Nickerson, D. P., Karr, J. R., & Sauro, H. M. (2020) · Cell Systems

Scientific Computing and Data ManagementGene Regulatory Network Analysis

Cited by 45

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4

Smith, L. P., Bergmann, F. T., Garny, A., Helikar, T., Karr, J., Nickerson, D., Sauro, H., Waltemath, D., & König, M. (2021) · Journal of Integrative Bioinformatics

Scientific Computing and Data ManagementResearch Data Management Practices

Cited by 17