Keenan, Alexandra B

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

Keenan, A. B., Torre, D., Lachmann, A., Leong, A. K., Wojciechowicz, M. L., Utti, V., Jagodnik, K. M., Kropiwnicki, E., Wang, Z., & Ma’ayan, A. (2019) · Nucleic Acids Research

Bioinformatics and Genomic NetworksGenomics and Chromatin Dynamics

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Massive mining of publicly available RNA-seq data from human and mouse

Lachmann, A., Torre, D., Keenan, A. B., Jagodnik, K. M., Lee, H. J., Wang, L., Silverstein, M. C., & Ma’ayan, A. (2018) · Nature Communications

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 701

Brain Cell Type Specific Gene Expression and Co-expression Network Architectures

McKenzie, A. T., Wang, M., Hauberg, M. E., Fullard, J. F., Kozlenkov, A., Keenan, A., Hurd, Y. L., Dracheva, S., Casaccia, P., Roussos, P., et al. (2018) · Scientific Reports

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 481

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

Keenan, A. B., Jenkins, S. L., Jagodnik, K. M., Koplev, S., He, E., Torre, D., Wang, Z., Dohlman, A. B., Silverstein, M. C., Lachmann, A., et al. (2018) · Cell Systems

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 423

L1000FWD: fireworks visualization of drug-induced transcriptomic signatures

Wang, Z., Lachmann, A., Keenan, A. B., & Ma’ayan, A. (2018) · Bioinformatics

Computational Drug Discovery MethodsBioinformatics and Genomic Networks

Cited by 195