Pai, Athma A.

Understanding mechanisms underlying human gene expression variation with RNA sequencing

Pickrell, J. K., Marioni, J. C., Pai, A. A., Degner, J. F., Engelhardt, B. E., Nkadori, E., Veyrieras, J.-B., Stephens, M., Gilad, Y., & Pritchard, J. K. (2010) · Nature

Genetic Associations and EpidemiologyRNA Research and Splicing

Cited by 1,256

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Bell, J. T., Pai, A. A., Pickrell, J. K., Gaffney, D. J., Pique-Regi, R., Degner, J. F., Gilad, Y., & Pritchard, J. K. (2011) · Genome Biology

Epigenetics and DNA MethylationGenetic Associations and Epidemiology

Cited by 838

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Pique-Regi, R., Degner, J. F., Pai, A. A., Gaffney, D. J., Gilad, Y., & Pritchard, J. K. (2011) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 521

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.

Degner, J. F., Marioni, J. C., Pai, A. A., Pickrell, J. K., Nkadori, E., Gilad, Y., & Pritchard, J. K. (2009) · Bioinformatics

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 502

Noisy Splicing Drives mRNA Isoform Diversity in Human Cells

Pickrell, J. K., Pai, A. A., Gilad, Y., & Pritchard, J. K. (2010) · PLoS Genetics

RNA Research and SplicingGenomics and Phylogenetic Studies

Cited by 311

A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system

Alterman, J. F., Godinho, B. M. D. C., Hassler, M. R., Ferguson, C. M., Echeverria, D., Sapp, E., Haraszti, R. A., Coles, A. H., Conroy, F., Miller, R., et al. (2019) · Nature Biotechnology

RNA Interference and Gene DeliveryDNA and Nucleic Acid Chemistry

Cited by 227

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

Chen, Y., Pai, A. A., Herudek, J., Lubas, M., Meola, N., Järvelin, A. I., Andersson, R., Pelechano, V., Steinmetz, L. M., Jensen, T. H., et al. (2016) · Nature Genetics

Genomics and Chromatin DynamicsRNA Research and Splicing

Cited by 78

Nuclear Localization of Huntingtin mRNA Is Specific to Cells of Neuronal Origin

Didiot, M.-C., Ferguson, C. M., Ly, S., Coles, A. H., Smith, A. O., Bicknell, A. A., Hall, L. M., Sapp, E., Echeverria, D., Pai, A. A., et al. (2018) · Cell Reports

Genetic Neurodegenerative DiseasesRNA Interference and Gene Delivery

Cited by 64

High-resolution profiling reveals coupled transcriptional and translational regulation of transgenes

Peterman, E. L., Ploessl, D. S., Love, K. S., Sanabria, V., Daniels, R. F., Johnstone, C. P., Godavarti, D. R., Kabaria, S. R., Oakes, C. G., Pai, A. A., et al. (2025) · Nucleic Acids Research

Gene Regulatory Network AnalysisRNA and protein synthesis mechanisms

Cited by 12