Yu, Michael Ku

Using deep learning to model the hierarchical structure and function of a cell

Ma, J., Yu, M. K., Fong, S., Ono, K., Sage, E., Demchak, B., Sharan, R., & Ideker, T. (2018) · Nature Methods

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 435

Systematic Evaluation of Molecular Networks for Discovery of Disease Genes

Huang, J. K., Carlin, D. E., Yu, M. K., Zhang, W., Kreisberg, J. F., Tamayo, P., & Ideker, T. (2018) · Cell Systems

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 289

Visible Machine Learning for Biomedicine

Yu, M. K., Ma, J., Fisher, J., Kreisberg, J. F., Raphael, B. J., & Ideker, T. (2018) · Cell

Machine Learning in HealthcareExplainable Artificial Intelligence (XAI)

Cited by 162

Metabolic independence drives gut microbial colonization and resilience in health and disease

Watson, A. R., Füssel, J., Veseli, I., DeLongchamp, J. Z., Silva, M., Trigodet, F., Lolans, K., Shaiber, A., Fogarty, E., Runde, J. M., et al. (2023) · Genome Biology

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 92

Interpretation of cancer mutations using a multiscale map of protein systems

Zheng, F., Kelly, M. R., Ramms, D. J., Heintschel, M. L., Tao, K., Tutuncuoglu, B., Lee, J. J., Ono, K., Foussard, H., Chen, M., et al. (2021) · Science

Bioinformatics and Genomic NetworksCancer Genomics and Diagnostics

Cited by 81

Active interaction mapping reveals the hierarchical organization of autophagy

Kramer, M. H., Farré, J.-C., Mitra, K., Yu, M. K., Ono, K., Demchak, B., Licon, K., Flagg, M., Balakrishnan, R., Cherry, J. M., et al. (2017) · Molecular Cell

Autophagy in Disease and TherapyFungal and yeast genetics research

Cited by 31