Liu, Yansheng

On the Dependency of Cellular Protein Levels on mRNA Abundance

Liu, Y., Beyer, A., & Aebersold, R. (2016) · Cell

Gene Regulatory Network AnalysisRNA and protein synthesis mechanisms

Cited by 3,221

Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma

Gao, Q., Zhu, H., Dong, L., Shi, W., Chen, R., Song, Z., Huang, C., Li, J., Dong, X., Zhou, Y., et al. (2019) · Cell

Hepatocellular Carcinoma Treatment and PrognosisHepatitis B Virus Studies

Cited by 1,096

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Collins, B. C., Hunter, C. L., Liu, Y., Schilling, B., Rosenberger, G., Bader, S. L., Chan, D. W., Gibson, B. W., Gingras, A.-C., Held, J. M., et al. (2017) · Nature Communications

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 576

A repository of assays to quantify 10,000 human proteins by SWATH-MS

Rosenberger, G., Koh, C. C., Guo, T., Röst, H. L., Kouvonen, P., Collins, B. C., Heusel, M., Liu, Y., Caron, E., Vichalkovski, A., et al. (2014) · Scientific Data

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 413

Multi-omic measurements of heterogeneity in HeLa cells across laboratories

Liu, Y., Mi, Y., Mueller, T., Kreibich, S., Williams, E. G., Van Drogen, A., Borel, C., Frank, M., Germain, P.-L., Bludau, I., et al. (2019) · Nature Biotechnology

Advanced Proteomics Techniques and ApplicationsViral Infectious Diseases and Gene Expression in Insects

Cited by 338

Quantitative variability of 342 plasma proteins in a human twin population

Liu, Y., Buil, A., Collins, B. C., Gillet, L. C., Blum, L. C., Cheng, L., Vitek, O., Mouritsen, J., Lachance, G., Spector, T. D., et al. (2015) · Molecular Systems Biology

Genetic Associations and EpidemiologyAdvanced Proteomics Techniques and Applications

Cited by 328

Quantitative measurements of N‐linked glycoproteins in human plasma by SWATH‐MS

Liu, Y., Hüttenhain, R., Surinova, S., Gillet, L. C., Mouritsen, J., Brunner, R., Navarro, P., & Aebersold, R. (2013) · PROTEOMICS

Advanced Proteomics Techniques and ApplicationsGlycosylation and Glycoproteins Research

Cited by 204

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

Rosenberger, G., Bludau, I., Schmitt, U., Heusel, M., Hunter, C. L., Liu, Y., MacCoss, M. J., MacLean, B. X., Nesvizhskii, A. I., Pedrioli, P. G. A., et al. (2017) · Nature Methods

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 203

Impact of Alternative Splicing on the Human Proteome

Liu, Y., Gonzàlez-Porta, M., Santos, S., Brazma, A., Marioni, J. C., Aebersold, R., Venkitaraman, A. R., & Wickramasinghe, V. O. (2017) · Cell Reports

RNA Research and SplicingAdvanced Proteomics Techniques and Applications

Cited by 190

Systematic proteome and proteostasis profiling in human trisomy 21 fibroblast cells

Liu, Y., Borel, C., Li, L., Müller, T., Williams, E. G., Germain, P.-L., Buljan, M., Sajic, T., Boersema, P. J., Shao, W., et al. (2017) · Nature Communications

Down syndrome and intellectual disability researchAdvanced Proteomics Techniques and Applications

Cited by 141

Targeted Dephosphorylation of Tau by Phosphorylation Targeting Chimeras (PhosTACs) as a Therapeutic Modality

Hu, Z., Chen, P.-H., Li, W., Douglas, T., Hines, J., Liu, Y., & Crews, C. M. (2023) · Journal of the American Chemical Society

Alzheimer's disease research and treatmentsCholinesterase and Neurodegenerative Diseases

Cited by 98

Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry

Bouchal, P., Schubert, O. T., Faktor, J., Capkova, L., Imrichova, H., Zoufalova, K., Paralova, V., Hrstka, R., Liu, Y., Ebhardt, H. A., et al. (2019) · Cell Reports

Advanced Proteomics Techniques and ApplicationsBreast Cancer Treatment Studies

Cited by 94

Human and mouse proteomics reveals the shared pathways in Alzheimer’s disease and delayed protein turnover in the amyloidome

Yarbro, J. M., Han, X., Dasgupta, A., Yang, K., Liu, D., Shrestha, H. K., Zaman, M., Wang, Z., Yu, K., Lee, D. G., et al. (2025) · Nature Communications

Alzheimer's disease research and treatmentsAdvanced Proteomics Techniques and Applications

Cited by 41

BoxCarmax: A High-Selectivity Data-Independent Acquisition Mass Spectrometry Method for the Analysis of Protein Turnover and Complex Samples

Salovska, B., Li, W., Di, Y., & Liu, Y. (2021) · Analytical Chemistry

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 35

Selection of Features with Consistent Profiles Improves Relative Protein Quantification in Mass Spectrometry Experiments

Tsai, T.-H., Choi, M., Banfai, B., Liu, Y., MacLean, B. X., Dunkley, T., & Vitek, O. (2020) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 31