Padhorny, Dzmitry

Allostery in Its Many Disguises: From Theory to Applications

Wodak, S. J., Paci, E., Dokholyan, N. V., Berezovsky, I. N., Horovitz, A., Li, J., Hilser, V. J., Bahar, I., Karanicolas, J., Stock, G., et al. (2019) · Structure

Protein Structure and DynamicsReceptor Mechanisms and Signaling

Cited by 404

Blind prediction of homo- and hetero-protein complexes: the CASP13-CAPRI experiment

Lensink, M. F., Brysbaert, G., Nadzirin, N., Velankar, S., Chaleil, R. A. G., Gerguri, T., Bates, P. A., Laine, E., Carbone, A., Grudinin, S., et al. (2019) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 122

Improved Docking of Protein Models by a Combination of Alphafold2 and ClusPro

Ghani, U., Desta, I., Jindal, A., Khan, O., Jones, G., Hashemi, N., Kotelnikov, S., Padhorny, D., Vajda, S., & Kozakov, D. (2021) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 68

ClusPro-DC: dimer classification by the Cluspro server for protein–protein docking

Yueh, C., Hall, D. R., Xia, B., Padhorny, D., Kozakov, D., & Vajda, S. (2017) · Journal of Molecular Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 53

MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction

Glukhov, E., Kalitin, D., Stepanenko, D., Zhu, Y., Nguyen, T., Jones, G., Simmerling, C., Mitchell, J. C., Vajda, S., Dill, K. A., et al. (2023) · Biophysical Journal

vaccines and immunoinformatics approachesProtein Structure and Dynamics

Cited by 22

Assessing the binding properties of CASP14 targets and models

Egbert, M., Ghani, U., Ashizawa, R., Kotelnikov, S., Nguyen, T., Desta, I., Hashemi, N., Padhorny, D., Kozakov, D., & Vajda, S. (2021) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 10