Stamatakis, Alexandros

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Stamatakis, A. (2014) · Bioinformatics

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 32,291

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Stamatakis, A. (2006) · Bioinformatics

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 15,582

A Rapid Bootstrap Algorithm for the RAxML Web Servers

Stamatakis, A., Hoover, P., & Rougemont, J. (2008) · Systematic Biology

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 7,028

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

Zhang, J., Kobert, K., Flouri, T., & Stamatakis, A. (2014) · Bioinformatics

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 4,497

Phylogenomics resolves the timing and pattern of insect evolution

Misof, B., Liu, S., Meusemann, K., Peters, R. S., Donath, A., Mayer, C., Frandsen, P. B., Ware, J., Flouri, T., Beutel, R. G., et al. (2014) · Science

Fossil Insects in AmberGenomics and Phylogenetic Studies

Cited by 2,694

Whole-genome analyses resolve early branches in the tree of life of modern birds

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., et al. (2014) · Science

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 1,901

Eleven grand challenges in single-cell data science

Lähnemann, D., Köster, J., Szczurek, E., McCarthy, D. J., Hicks, S. C., Robinson, M. D., Vallejos, C. A., Campbell, K. R., Beerenwinkel, N., Mahfouz, A., et al. (2020) · Genome Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 1,327

Selecting optimal partitioning schemes for phylogenomic datasets

Lanfear, R., Calcott, B., Kainer, D., Mayer, C., & Stamatakis, A. (2014) · BMC Evolutionary Biology

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 762

Assessing the root of bilaterian animals with scalable phylogenomic methods

Hejnol, A., Obst, M., Stamatakis, A., Ott, M., Rouse, G. W., Edgecombe, G. D., Martinez, P., Baguñà, J., Bailly, X., Jondelius, U., et al. (2009) · Proceedings of the Royal Society B: Biological Sciences

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 747

Using RAxML to infer phylogenies

Stamatakis, A. (2015) · Current Protocols in Bioinformatics

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 243

A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans

Pavlidis, P., Jensen, J. D., Stephan, W., & Stamatakis, A. (2012) · Molecular Biology and Evolution

Genetic diversity and population structureGenetic Associations and Epidemiology

Cited by 221

The State of Software for Evolutionary Biology

Darriba, D., Flouri, T., & Stamatakis, A. (2018) · Molecular Biology and Evolution

Scientific Computing and Data ManagementSoftware Engineering Research

Cited by 48