Sunagawa, Shinichi

Richness of human gut microbiome correlates with metabolic markers

Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.-M., Kennedy, S., et al. (2013) · Nature

Gut microbiota and healthAdipokines, Inflammation, and Metabolic Diseases

Cited by 4,662

An integrated catalog of reference genes in the human gut microbiome

MetaHIT Consortium, Li, J., Jia, H., Cai, X., Zhong, H., Feng, Q., Sunagawa, S., Arumugam, M., Kultima, J. R., Prifti, E., et al. (2014) · Nature Biotechnology

Gut microbiota and healthGenomics and Phylogenetic Studies

Cited by 2,164

Human gut microbes impact host serum metabolome and insulin sensitivity

Pedersen, H. K., Gudmundsdottir, V., Nielsen, H. B., Hyotylainen, T., Nielsen, T., Jensen, B. A. H., Forslund, K., Hildebrand, F., Prifti, E., Falony, G., et al. (2016) · Nature

Gut microbiota and healthAdipokines, Inflammation, and Metabolic Diseases

Cited by 2,116

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

MetaHIT consortium, Forslund, K., Hildebrand, F., Nielsen, T., Falony, G., Le Chatelier, E., Sunagawa, S., Prifti, E., Vieira-Silva, S., Gudmundsdottir, V., et al. (2015) · Nature

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 2,116

Potential of fecal microbiota for early-stage detection of colorectal cancer

Zeller, G., Tap, J., Voigt, A. Y., Sunagawa, S., Kultima, J. R., Costea, P. I., Amiot, A., Böhm, J., Brunetti, F., Habermann, N., et al. (2014) · Molecular Systems Biology

Gut microbiota and healthColorectal Cancer Screening and Detection

Cited by 1,375

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

Wirbel, J., Pyl, P. T., Kartal, E., Zych, K., Kashani, A., Milanese, A., Fleck, J. S., Voigt, A. Y., Palleja, A., Ponnudurai, R., et al. (2019) · Nature Medicine

Gut microbiota and healthClostridium difficile and Clostridium perfringens research

Cited by 1,373

Salt-responsive gut commensal modulates TH17 axis and disease

Wilck, N., Matus, M. G., Kearney, S. M., Olesen, S. W., Forslund, K., Bartolomaeus, H., Haase, S., Mähler, A., Balogh, A., Markó, L., et al. (2017) · Nature

Gut microbiota and healthProbiotics and Fermented Foods

Cited by 1,310

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

MetaHIT Consortium, Nielsen, H. B., Almeida, M., Juncker, A. S., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., et al. (2014) · Nature Biotechnology

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 1,184

Enterotypes in the landscape of gut microbial community composition

Costea, P. I., Hildebrand, F., Arumugam, M., Bäckhed, F., Blaser, M. J., Bushman, F. D., de Vos, W. M., Ehrlich, S. D., Fraser, C. M., Hattori, M., et al. (2017) · Nature Microbiology

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 1,138

Genomic variation landscape of the human gut microbiome

Schloissnig, S., Arumugam, M., Sunagawa, S., Mitreva, M., Tap, J., Zhu, A., Waller, A., Mende, D. R., Kultima, J. R., Martin, J., et al. (2013) · Nature

Gut microbiota and healthGenomics and Phylogenetic Studies

Cited by 907

Towards standards for human fecal sample processing in metagenomic studies

Costea, P. I., Zeller, G., Sunagawa, S., Pelletier, E., Alberti, A., Levenez, F., Tramontano, M., Driessen, M., Hercog, R., Jung, F.-E., et al. (2017) · Nature Biotechnology

Gut microbiota and healthGenomics and Phylogenetic Studies

Cited by 893

Extensive transmission of microbes along the gastrointestinal tract

Schmidt, T. S., Hayward, M. R., Coelho, L. P., Li, S. S., Costea, P. I., Voigt, A. Y., Wirbel, J., Maistrenko, O. M., Alves, R. J., Bergsten, E., et al. (2019) · eLife

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 596

Microbial abundance, activity and population genomic profiling with mOTUs2

Milanese, A., Mende, D. R., Paoli, L., Salazar, G., Ruscheweyh, H.-J., Cuenca, M., Hingamp, P., Alves, R., Costea, P. I., Coelho, L. P., et al. (2019) · Nature Communications

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 446

Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

Vogtmann, E., Hua, X., Zeller, G., Sunagawa, S., Voigt, A. Y., Hercog, R., Goedert, J. J., Shi, J., Bork, P., & Sinha, R. (2016) · PLOS ONE

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 366

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox

Wirbel, J., Zych, K., Essex, M., Karcher, N., Kartal, E., Salazar, G., Bork, P., Sunagawa, S., & Zeller, G. (2021) · Genome Biology

Gut microbiota and healthGenomics and Phylogenetic Studies

Cited by 269

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Delmont, T. O., Gaia, M., Hinsinger, D. D., Frémont, P., Vanni, C., Fernandez-Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., et al. (2022) · Cell Genomics

Protist diversity and phylogenyGenomics and Phylogenetic Studies

Cited by 173

Metabolic landscape of the male mouse gut identifies different niches determined by microbial activities

Meier, K. H. U., Trouillon, J., Li, H., Lang, M., Fuhrer, T., Zamboni, N., Sunagawa, S., Macpherson, A. J., & Sauer, U. (2023) · Nature Metabolism

Gut microbiota and healthMetabolomics and Mass Spectrometry Studies

Cited by 48

The rearing environment persistently modulates mouse phenotypes from the molecular to the behavioural level

Jaric, I., Voelkl, B., Clerc, M., Schmid, M. W., Novak, J., Rosso, M., Rufener, R., von Kortzfleisch, V. T., Richter, S. H., Buettner, M., et al. (2022) · PLoS Biology

Animal Behavior and ReproductionEpigenetics and DNA Methylation

Cited by 32

metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes

Van Rossum, T., Costea, P. I., Paoli, L., Alves, R., Thielemann, R., Sunagawa, S., & Bork, P. (2022) · Bioinformatics

Genomics and Phylogenetic StudiesGut microbiota and health

Cited by 23