Sonnhammer, Erik

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

Krogh, A., Larsson, B., von Heijne, G., & Sonnhammer, E. L. L. (2001) · Journal of Molecular Biology

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 12,654

Pfam: The protein families database in 2021

Mistry, J., Chuguransky, S., Williams, L., Qureshi, M., Salazar, G. A., Sonnhammer, E. L. L., Tosatto, S. C. E., Paladin, L., Raj, S., Richardson, L. J., et al. (2021) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 7,452

Pfam: the protein families database

Finn, R. D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Heger, A., Hetherington, K., Holm, L., Mistry, J., et al. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesEnzyme Structure and Function

Cited by 6,148

The Pfam protein families database in 2019

El-Gebali, S., Mistry, J., Bateman, A., Eddy, S. R., Luciani, A., Potter, S. C., Qureshi, M., Richardson, L. J., Salazar, G. A., Smart, A., et al. (2019) · Nucleic Acids Research

Genomics and Phylogenetic StudiesProtein Structure and Dynamics

Cited by 4,602

The Pfam protein families database

Punta, M., Coggill, P. C., Eberhardt, R. Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J., et al. (2012) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 3,719

The Pfam protein families database

Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., et al. (2010) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 2,694

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

Ostlund, G., Schmitt, T., Forslund, K., Kostler, T., Messina, D. N., Roopra, S., Frings, O., & Sonnhammer, E. L. L. (2010) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 623

FAT: a novel domain in PIK-related kinases

Bosotti, R., Isacchi, A., & Sonnhammer, E. L. L. (2000) · Trends in Biochemical Sciences

PI3K/AKT/mTOR signaling in cancerProtein Kinase Regulation and GTPase Signaling

Cited by 313

Standardized benchmarking in the quest for orthologs

Quest for Orthologs consortium, Altenhoff, A. M., Boeckmann, B., Capella-Gutierrez, S., Dalquen, D. A., DeLuca, T., Forslund, K., Huerta-Cepas, J., Linard, B., Pereira, C., et al. (2016) · Nature Methods

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 214

Advances and Applications in the Quest for Orthologs

Glover, N., Dessimoz, C., Ebersberger, I., Forslund, S. K., Gabaldón, T., Huerta-Cepas, J., Martin, M.-J., Muffato, M., Patricio, M., Pereira, C., et al. (2019) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 94

Joining forces in the quest for orthologs

Gabaldón, T., Dessimoz, C., Huxley-Jones, J., Vilella, A. J., Sonnhammer, E. L., & Lewis, S. (2009) · Genome Biology

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 74

The Quest for Orthologs orthology benchmark service in 2022

Nevers, Y., Jones, T. E. M., Jyothi, D., Yates, B., Ferret, M., Portell-Silva, L., Codo, L., Cosentino, S., Marcet-Houben, M., Vlasova, A., et al. (2022) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 74

Quest for Orthologs in the Era of Biodiversity Genomics

Langschied, F., Bordin, N., Cosentino, S., Fuentes-Palacios, D., Glover, N., Hiller, M., Hu, Y., Huerta-Cepas, J., Coelho, L. P., Iwasaki, W., et al. (2024) · Genome Biology and Evolution

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 26

Avoiding pitfalls in gene (co)expression meta-analysis

Östlund, G., & Sonnhammer, E. L. L. (2014) · Genomics

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 11