Dewey, Colin N.

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Li, B., & Dewey, C. N. (2011) · BMC Bioinformatics

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 22,179

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., et al. (2013) · Nature Protocols

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 8,464

Expanded encyclopaedias of DNA elements in the human and mouse genomes

The ENCODE Project Consortium, Abascal, F., Acosta, R., Addleman, N. J., Adrian, J., Afzal, V., Ai, R., Aken, B., Akiyama, J. A., Jammal, O. A., et al. (2020) · Nature

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 2,378

RNA-Seq gene expression estimation with read mapping uncertainty

Li, B., Ruotti, V., Stewart, R. M., Thomson, J. A., & Dewey, C. N. (2010) · Bioinformatics

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 1,198

Aligning Multiple Whole Genomes with Mercator and MAVID

Dewey, C. N. (2007) · Methods in Molecular Biology

Genomics and Phylogenetic StudiesGenome Rearrangement Algorithms

Cited by 86

CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology

Bernstein, M. N., Ma, Z., Gleicher, M., & Dewey, C. N. (2021) · iScience

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 45