Weigt, Martin

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Morcos, F., Pagnani, A., Lunt, B., Bertolino, A., Marks, D. S., Sander, C., Zecchina, R., Onuchic, J. N., Hwa, T., & Weigt, M. (2011) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 1,434

Identification of direct residue contacts in protein–protein interaction by message passing

Weigt, M., White, R. A., Szurmant, H., Hoch, J. A., & Hwa, T. (2009) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsBacterial Genetics and Biotechnology

Cited by 1,025

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

Ekeberg, M., Lövkvist, C., Lan, Y., Weigt, M., & Aurell, E. (2013) · Physical Review E

Protein Structure and DynamicsRNA and protein synthesis mechanisms

Cited by 661

An evolution-based model for designing chorismate mutase enzymes

Russ, W. P., Figliuzzi, M., Stocker, C., Barrat-Charlaix, P., Socolich, M., Kast, P., Hilvert, D., Monasson, R., Cocco, S., Weigt, M., et al. (2020) · Science

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 313

Inter-residue, inter-protein and inter-family coevolution: bridging the scales

Szurmant, H., & Weigt, M. (2018) · Current Opinion in Structural Biology

Protein Structure and DynamicsGenomics and Phylogenetic Studies

Cited by 81

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins

Gandarilla-Pérez, C. A., Pinilla, S., Bitbol, A.-F., & Weigt, M. (2023) · PLOS Computational Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 13

Modeling Sequence-Space Exploration and Emergence of Epistatic Signals in Protein Evolution.

Bisardi, M., Rodriguez-Rivas, J., Zamponi, F., & Weigt, M. (2022) · Molecular Biology and Evolution

Evolution and Genetic DynamicsProtein Structure and Dynamics

Cited by 0