Käll, Lukas

Semi-supervised learning for peptide identification from shotgun proteomics datasets

Käll, L., Canterbury, J. D., Weston, J., Noble, W. S., & MacCoss, M. J. (2007) · Nature Methods

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 2,424

Automated model building and protein identification in cryo-EM maps

Jamali, K., Käll, L., Zhang, R., Brown, A., Kimanius, D., & Scheres, S. H. W. (2024) · Nature

Advanced Electron Microscopy Techniques and ApplicationsProtein Structure and Dynamics

Cited by 686

Automated model building and protein identification in cryo-EM maps

Jamali, K., Käll, L., Zhang, R., Brown, A., Kimanius, D., & Scheres, S. H. W. (2023) · Nature

Advanced Electron Microscopy Techniques and ApplicationsProtein Structure and Dynamics

Cited by 686

Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases

Käll, L., Storey, J. D., MacCoss, M. J., & Noble, W. S. (2008) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 607

Gene‐specific correlation of RNA and protein levels in human cells and tissues

Edfors, F., Danielsson, F., Hallström, B. M., Käll, L., Lundberg, E., Pontén, F., Forsström, B., & Uhlén, M. (2016) · Molecular Systems Biology

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 493

Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0

The, M., MacCoss, M. J., Noble, W. S., & Käll, L. (2016) · Journal of the American Society for Mass Spectrometry

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 454

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data

Ting, Y. S., Egertson, J. D., Payne, S. H., Kim, S., MacLean, B., Käll, L., Aebersold, R., Smith, R. D., Noble, W. S., & MacCoss, M. J. (2015) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 175

Putting humpty dumpty back together again: what does protein quantification mean in bottom-up proteomics?

Plubell, D. L., Käll, L., Webb-Robertson, B.-J., Bramer, L. M., Ives, A., Kelleher, N. L., Smith, L. M., Montine, T. J., Wu, C. C., & MacCoss, M. J. (2022) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsAdvanced Biosensing Techniques and Applications

Cited by 85

Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences

Zhang, B., Pirmoradian, M., Zubarev, R., & Käll, L. (2017) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 68

Integrated Identification and Quantification Error Probabilities for Shotgun Proteomics

The, M., & Käll, L. (2019) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 37

Pairwise Attention: Leveraging Mass Differences to Enhance De Novo Sequencing of Mass Spectra

Lapin, J., Nilsson, A., Wilhelm, M., & Käll, L. (2025) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 4

Pairwise Attention: Leveraging Mass Differences to Enhance De Novo Sequencing of Mass Spectra

Lapin, J., Nilsson, A., Wilhelm, M., & Käll, L. (2025) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 4