Cimini, Beth A.

Genetic and transcriptional evolution alters cancer cell line drug response

Ben-David, U., Siranosian, B., Ha, G., Tang, H., Oren, Y., Hinohara, K., Strathdee, C. A., Dempster, J., Lyons, N. J., Burns, R., et al. (2018) · Nature

Cancer Genomics and DiagnosticsCancer Cells and Metastasis

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Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

Caicedo, J. C., Goodman, A., Karhohs, K. W., Cimini, B. A., Ackerman, J., Haghighi, M., Heng, C., Becker, T., Doan, M., McQuin, C., et al. (2019) · Nature Methods

Cell Image Analysis TechniquesDigital Imaging for Blood Diseases

Cited by 809

Understanding metric-related pitfalls in image analysis validation

Reinke, A., Tizabi, M. D., Baumgartner, M., Eisenmann, M., Heckmann-Nötzel, D., Kavur, A. E., Rädsch, T., Sudre, C. H., Acion, L., Antonelli, M., et al. (2024) · Nature Methods

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

Cited by 241

Optimizing the Cell Painting assay for image-based profiling

Cimini, B. A., Chandrasekaran, S. N., Kost-Alimova, M., Miller, L., Goodale, A., Fritchman, B., Byrne, P., Garg, S., Jamali, N., Logan, D. J., et al. (2023) · Nature Protocols

Cell Image Analysis TechniquesSingle-cell and spatial transcriptomics

Cited by 177

The multimodality cell segmentation challenge: toward universal solutions

Ma, J., Xie, R., Ayyadhury, S., Ge, C., Gupta, A., Gupta, R., Gu, S., Zhang, Y., Lee, G., Kim, J., et al. (2024) · Nature Methods

Cell Image Analysis TechniquesAdvanced Neural Network Applications

Cited by 154

Common Limitations of Image Processing Metrics: A Picture Story

Reinke, A., Tizabi, M. D., Sudre, C. H., Eisenmann, M., Rädsch, T., Baumgartner, M., Acion, L., Antonelli, M., Arbel, T., Bakas, S., et al. (2021) · arXiv

Medical Image Segmentation TechniquesCell Image Analysis Techniques

Cited by 126

Metrics reloaded: Recommendations for image analysis validation

Maier-Hein, L., Reinke, A., Godau, P., Tizabi, M. D., Buettner, F., Christodoulou, E., Glocker, B., Isensee, F., Kleesiek, J., Kozubek, M., et al. (2022) · arXiv

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

Cited by 59

Assessing the performance of the Cell Painting assay across different imaging systems

Tromans‐Coia, C., Jamali, N., Abbasi, H. S., Giuliano, K. A., Hagimoto, M., Jan, K., Kaneko, E., Letzsch, S., Schreiner, A., Sexton, J. Z., et al. (2023) · Cytometry Part A

Cell Image Analysis TechniquesSingle-cell and spatial transcriptomics

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