Friedberg, Iddo

Biopython: freely available python tools for computational molecular biology and bioinformatics

Cock, P. J. A., Antao, T., Chang, J. T., Chapman, B. A., Cox, C. J., Dalke, A., Friedberg, I., Hamelryck, T., Kauff, F., Wilczynski, B., et al. (2009) · Bioinformatics

Genetics, Bioinformatics, and Biomedical ResearchGenomics and Phylogenetic Studies

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Protein Tyrosine Phosphatases in the Human Genome

Alonso, A., Sasin, J., Bottini, N., Friedberg, I., Friedberg, I., Osterman, A., Godzik, A., Hunter, T., Dixon, J., & Mustelin, T. (2004) · Cell

Protein Tyrosine PhosphatasesProtein Kinase Regulation and GTPase Signaling

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A large-scale evaluation of computational protein function prediction

Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., et al. (2013) · Nature Methods

Bioinformatics and Genomic NetworksMachine Learning in Bioinformatics

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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., et al. (2019) · Genome Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 452

Submitochondrial distribution of three key steroidogenic proteins (steroidogenic acute regulatory protein and cytochrome P450scc and 3β-hydroxysteroid dehydrogenase isomerase enzymes) upon stimulation by intracellular calcium in adrenal glomerulosa cells

Cherradi, N., Rossier, M. F., Vallotton, M. B., Timberg, R., Friedberg, I., Orly, J., Wang, X. J., Stocco, D. M., & Capponi, A. M. (1997) · Journal of Biological Chemistry

Hormonal Regulation and HypertensionAdrenal Hormones and Disorders

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Biases in the Experimental Annotations of Protein Function and Their Effect on Our Understanding of Protein Function Space

Schnoes, A. M., Ream, D. C., Thorman, A. W., Babbitt, P. C., & Friedberg, I. (2013) · PLoS Computational Biology

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

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Learning from the unknown: exploring the range of bacterial functionality

Mahlich, Y., Zhu, C., Chung, H., Velaga, P. K., De Paolis Kaluza, M. C., Radivojac, P., Friedberg, I., & Bromberg, Y. (2023) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 10

Learning from the unknown: exploring the range of bacterial functionality

Mahlich, Y., Zhu, C., Chung, H., Velaga, P. K., De Paolis Kaluza, M. C., Radivojac, P., Friedberg, I., & Bromberg, Y. (2022) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 10

A longitudinal analysis of function annotations of the human proteome reveals consistently high biases

Phan, A., Joshi, P., Kadelka, C., & Friedberg, I. (2025) · Database

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

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