Colwell, Lucy

Protein 3D Structure Computed from Evolutionary Sequence Variation

Marks, D. S., Colwell, L. J., Sheridan, R., Hopf, T. A., Pagnani, A., Zecchina, R., & Sander, C. (2011) · PLoS ONE

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 1,144

Rethinking Attention with Performers

Choromanski, K., Likhosherstov, V., Dohan, D., Song, X., Gane, A., Sarlos, T., Hawkins, P., Davis, J., Mohiuddin, A., Kaiser, L., et al. (2020) · arXiv

Topic ModelingAdvanced Neural Network Applications

Cited by 695

Predicting multiple conformations via sequence clustering and AlphaFold2

Wayment-Steele, H. K., Ojoawo, A., Otten, R., Apitz, J. M., Pitsawong, W., Hömberger, M., Ovchinnikov, S., Colwell, L., & Kern, D. (2024) · Nature

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 545

Using deep learning to annotate the protein universe

Bileschi, M. L., Belanger, D., Bryant, D. H., Sanderson, T., Carter, B., Sculley, D., Bateman, A., DePristo, M. A., & Colwell, L. J. (2022) · Nature Biotechnology

Machine Learning in BioinformaticsGenomics and Phylogenetic Studies

Cited by 332

Comparative analysis of nanobody sequence and structure data

Mitchell, L. S., & Colwell, L. J. (2018) · Proteins Structure Function and Bioinformatics

Monoclonal and Polyclonal Antibodies ResearchProtein Structure and Dynamics

Cited by 233

Computational approaches to therapeutic antibody design: established methods and emerging trends

Norman, R. A., Ambrosetti, F., Bonvin, A. M. J. J., Colwell, L. J., Kelm, S., Kumar, S., & Krawczyk, K. (2020) · Briefings in Bioinformatics

Monoclonal and Polyclonal Antibodies Researchvaccines and immunoinformatics approaches

Cited by 219

Analysis of nanobody paratopes reveals greater diversity than classical antibodies

Mitchell, L. S., & Colwell, L. J. (2018) · Protein Engineering Design and Selection

Monoclonal and Polyclonal Antibodies ResearchProtein Structure and Dynamics

Cited by 138

Does sequence clustering confound AlphaFold2?

Wayment-Steele, H. K., Ovchinnikov, S., Colwell, L., & Kern, D. (2024) · Journal of Molecular Biology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 8

A Vast Navigable Protein Sequence Subspace

Sinai, S., Gane, A., Jain, N., Bryant, D., Bileschi, M., Bashir, A., Church, G. M., Kelsic, E., & Colwell, L. (2026) · bioRxiv (Cold Spring Harbor Laboratory)

Evolution and Genetic DynamicsVirus-based gene therapy research

Cited by 0