Kainmueller, Dagmar

A connectome and analysis of the adult Drosophila central brain

Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., et al. (2020) · eLife

Neurobiology and Insect Physiology ResearchCell Image Analysis Techniques

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Understanding metric-related pitfalls in image analysis validation

Reinke, A., Tizabi, M. D., Baumgartner, M., Eisenmann, M., Heckmann-Nötzel, D., Kavur, A. E., Rädsch, T., Sudre, C. H., Acion, L., Antonelli, M., et al. (2024) · Nature Methods

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

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A searchable image resource of Drosophila GAL4 driver expression patterns with single neuron resolution

Meissner, G. W., Nern, A., Dorman, Z., DePasquale, G. M., Forster, K., Gibney, T., Hausenfluck, J. H., He, Y., Iyer, N. A., Jeter, J., et al. (2023) · eLife

Cell Image Analysis TechniquesNeurobiology and Insect Physiology Research

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Common Limitations of Image Processing Metrics: A Picture Story

Reinke, A., Tizabi, M. D., Sudre, C. H., Eisenmann, M., Rädsch, T., Baumgartner, M., Acion, L., Antonelli, M., Arbel, T., Bakas, S., et al. (2021) · arXiv

Medical Image Segmentation TechniquesCell Image Analysis Techniques

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A Connectome of the Male Drosophila Ventral Nerve Cord

Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Januszewski, M., Lu, Z., Marin, E. C., Preibisch, S., Xu, C. S., Bogovic, J., Champion, A. S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

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Metrics reloaded: Recommendations for image analysis validation

Maier-Hein, L., Reinke, A., Godau, P., Tizabi, M. D., Buettner, F., Christodoulou, E., Glocker, B., Isensee, F., Kleesiek, J., Kozubek, M., et al. (2022) · arXiv

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

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A Connectome of the Male Drosophila Ventral Nerve Cord

Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Januszewski, M., Lu, Z., Marin, E. C., Preibisch, S., Xu, C. S., Bogovic, J., Champion, A. S., et al. (2024) · eLife

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

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Multi-object Segmentation of Head Bones

Kainmueller, D., Lamecker, H., Seim, H., & Zachow, S. (2009) · The MIDAS Journal

Medical Image Segmentation TechniquesMedical Imaging and Analysis

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Automated classification of cellular expression in multiplexed imaging data with Nimbus

Rumberger, J. L., Greenwald, N. F., Ranek, J. S., Boonrat, P., Walker, C., Franzen, J., Varra, S. R., Kong, A., Sowers, C., Liu, C. C., et al. (2024) · Nature Methods

Cell Image Analysis TechniquesSingle-cell and spatial transcriptomics

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Author response: A connectome and analysis of the adult Drosophila central brain

Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., et al. (2020) · eLife

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

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