A Connectome of the Male Drosophila Ventral Nerve Cord
Open accessAbstract
Abstract Animal behavior is principally expressed through neural control of muscles. Therefore understanding how the brain controls behavior requires mapping neuronal circuits all the way to motor neurons. We have previously established technology to collect large-volume electron microscopy data sets of neural tissue and fully reconstruct the morphology of the neurons and their chemical synaptic connections throughout the volume. Using these tools we generated a dense wiring diagram, or connectome, for a large portion of the Drosophila central brain. However, in most animals, including the fly, the majority of motor neurons are located outside the brain in a neural center closer to the body, i.e. the mammalian spinal cord or insect ventral nerve cord (VNC). In this paper, we extend our effort to map full neural circuits for behavior by generating a connectome of the VNC of a male fly.
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DNp28 projects to the intermediate, haltere, wing, and neck tectula of the ventral nerve cord.
“DNp28 projects to the intermediate, haltere, wing, and neck tectula of the ventral nerve cord62,71.”
From Neuronal wiring diagram of an adult brain (2023) · cites this paper as [62]
Approximately 20% of descending neurons (DNs) project unilaterally and form output synapses in all three leg neuromeres.
“approximately 20% of DNs project unilaterally and form output synapses in all three leg neuromeres”
From Fine-grained descending control of steering in walking Drosophila (2024) · cites this paper as [28]
Drosophila is the only limbed animal with a near-complete connectome.
“it is the only limbed animal with a near-complete connectome23–27”
From Fine-grained descending control of steering in walking <i>Drosophila</i> (2023) · cites this paper as [26]
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Cites
Distinctive Image Features from Scale-Invariant Keypoints
Lowe, D. G. (2004) · International Journal of Computer Vision · doi:10.1023/b:visi.0000029664.99615.94 · Cited by 55,589 · see citing works
Elastix: a toolbox for intensity-based medical image registration
Klein, S., Staring, M., Murphy, K., Viergever, M. A., & Pluim, J. (2010) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2009.2035616 · Cited by 4,311 · see citing works
A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Zheng, Z., Lauritzen, J. S., Perlman, E., Robinson, C. G., Nichols, M., Milkie, D., Torrens, O., Price, J., Fisher, C. B., Sharifi, N., et al. (2018) · Cell · doi:10.1016/j.cell.2018.06.019 · Cited by 1,050 · see citing works
Self-citationSoftware for bead-based registration of selective plane illumination microscopy data
Preibisch, S., Saalfeld, S., Schindelin, J., & Tomančák, P. (2010) · Nature Methods · doi:10.1038/nmeth0610-418 · Cited by 412 · see citing works
Self-citationHulse, B. K., Haberkern, H., Franconville, R., Turner-Evans, D., Takemura, S.-Y., Wolff, T., Noorman, M., Dreher, M., Dan, C., Parekh, R., et al. (2021) · eLife · doi:10.7554/elife.66039 · Cited by 392 · see citing works
Self-citationHulse, B. K., Haberkern, H., Franconville, R., Turner-Evans, D. B., Takemura, S., Wolff, T., Noorman, M., Dreher, M., Dan, C., Parekh, R., et al. (2020) · doi:10.1101/2020.12.08.413955 · Cited by 392 · cited 2× · see citing works
“, 2022]) or maintaining an internal representation of heading (see for example, [Hulse et al., 2021]), and implementing reinforcement rules for associative learning (see for example [Li et al.”
BackgroundSelf-citationHigh-precision automated reconstruction of neurons with flood-filling networks
Januszewski, M., Kornfeld, J., Li, P. H., Pope, A., Blakely, T., Lindsey, L., Maitin-Shepard, J., Tyka, M., Denk, W., & Jain, V. (2018) · Nature Methods · doi:10.1038/s41592-018-0049-4 · Cited by 380 · see citing works
Self-citationBigDataViewer: visualization and processing for large image data sets
Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomančák, P. (2015) · Nature Methods · doi:10.1038/nmeth.3392 · Cited by 280 · see citing works
Self-citationRobust registration of calcium images by learned contrast synthesis
Bogovic, J., Hanslovsky, P., Wong, A. M., & Saalfeld, S. (2016) · IEEE International Symposium on Biomedical Imaging (ISBI) · doi:10.1109/isbi.2016.7493463 · Cited by 239 · see citing works
Self-citationAn open-access volume electron microscopy atlas of whole cells and tissues
Xu, C. S., Pang, S., Shtengel, G. E., Müller, A., Ritter, A. T., Hoffman, H. K., Takemura, S.-Y., Lu, Z., Pasolli, H. A., Iyer, N., et al. (2021) · Nature · doi:10.1038/s41586-021-03992-4 · Cited by 189 · see citing works
Self-citationUltrastructurally smooth thick partitioning and volume stitching for large-scale connectomics
Hayworth, K. J., Xu, C. S., Lu, Z., Knott, G. W., Fetter, R. D., Tapia, J. C., Lichtman, J. W., & Hess, H. F. (2015) · Nature Methods · doi:10.1038/nmeth.3292 · Cited by 144 · see citing works
Self-citationImgLib2—generic image processing in Java
Pietzsch, T., Preibisch, S., Tomančák, P., & Saalfeld, S. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts543 · Cited by 143 · see citing works
Self-citationAn unbiased template of the Drosophila brain and ventral nerve cord
Bogovic, J. A., Otsuna, H., Heinrich, L., Ito, M., Jeter, J., Meissner, G., Nern, A., Colonell, J., Malkesman, O., Ito, K., et al. (2020) · PLOS ONE · doi:10.1371/journal.pone.0236495 · Cited by 131 · see citing works
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Azevedo, A., Lesser, E., Phelps, J. S., Mark, B., Elabbady, L., Kuroda, S., Sustar, A., Moussa, A., Kandelwal, A., Dallmann, C. J., et al. (2022) · doi:10.1101/2022.12.15.520299 · Cited by 120 · cited 2× · see citing works
“This dataset also complements a partially proofread female VNC connectome ([Phelps et al., 2021]; [Azevedo et al., 2022]), allowing for future detailed comparison of male and female premotor circuits.”
BackgroundMethodConnectomic reconstruction of a female Drosophila ventral nerve cord
Azevedo, A., Lesser, E., Phelps, J. S., Mark, B., Elabbady, L., Kuroda, S., Sustar, A., Moussa, A., Khandelwal, A., Dallmann, C. J., et al. (2024) · Nature · doi:10.1038/s41586-024-07389-x · Cited by 120 · see citing works
Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2020) · doi:10.1101/2020.06.12.148775 · Cited by 115 · see citing works
Self-citationA systematic nomenclature for the Drosophila ventral nerve cord
Court, R., Namiki, S., Armstrong, J. D., Börner, J., Card, G., Costa, M., Dickinson, M., Duch, C., Korff, W., Mann, R., et al. (2020) · Neuron · doi:10.1016/j.neuron.2020.08.005 · Cited by 96 · see citing works
Self-citationNeuronal circuits integrating visual motion information in Drosophila melanogaster
Shinomiya, K., Nern, A., Meinertzhagen, I. A., Plaza, S. M., & Reiser, M. B. (2022) · Current Biology · doi:10.1016/j.cub.2022.06.061 · Cited by 64 · see citing works
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Galili, D. S., Jefferis, G. S. X. E., & Costa, M. (2022) · Current Opinion in Insect Science · doi:10.1016/j.cois.2022.100968 · Cited by 54 · see citing works
Self-citationMarin, E. C., Morris, B. J., Stürner, T., Champion, A. S., Krzeminski, D., Badalamente, G., Gkantia, M., Dunne, C. R., Eichler, K., Takemura, S.-Y., et al. (2023) · doi:10.1101/2023.06.05.543407 · Cited by 33 · see citing works
Self-citationHanslovsky, P., Bogovic, J., & Saalfeld, S. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw794 · Cited by 25 · see citing works
Self-citationSegmentation-Enhanced CycleGANPreprint
Januszewski, M., & Jain, V. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/548081 · Cited by 18 · see citing works
Self-citationThe connectome of the adult Drosophila mushroom body: implications for functionPreprint
Li, F., Lindsey, J. W., Marin, E. C., Otto, N., Dreher, M., Dempsey, G., Stark, I., Bates, A. S., Pleijzier, M. W., Schlegel, P., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.29.273276 · Cited by 17 · see citing works
Self-citationMulti-object Segmentation with Coupled Deformable Models
Kainmueller, D., Lamecker, H., & Zachow, S. (2013) · Cited by 14 · see citing works
Self-citationEn bloc preparation of Drosophila brains enables high-throughput FIB-SEM connectomicsPreprint
Lu, Z., Xu, C. S., Hayworth, K. J., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/855130 · Cited by 12 · see citing works
Self-citation
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Research works printed but not linked: 2
- A. W. Azevedo, E. Lesser, B. Mark, J. S. Phelps, L. Elabbady, S. Kuroda, A. E. Sustar, A. J. Moussa, A. Kandelwal, C. J. Dallmann, et al. Tools for compre- hensive reconstruction and analysis of Drosophila motor circuits. bioRxiv, pages 2022-12, 2022.
- J. S. Phelps, D. G. C. Hildebrand, B. J. Graham, A. T. Kuan, L. A. Thomas, T. M. Nguyen, J. Buhmann, A. W. Azevedo, A. Sustar, S. Agrawal, et al. Reconstruc- tion of motor control circuits in adult Drosophila using automated transmission electron microscopy. Cell, 184(3):759-774, 2021.
Cited by
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Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2024) · Cell · doi:10.1016/j.cell.2024.03.016 · Cited by 233 · see citing works
Self-citationNeuronal wiring diagram of an adult brain
Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Lin, A., Costa, M., Eichler, K., Yin, Y., et al. (2023) · doi:10.1101/2023.06.27.546656 · Cited by 149 · see citing works
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Lin, A., Yang, R., Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Costa, M., Eichler, K., et al. (2024) · Nature · doi:10.1038/s41586-024-07968-y · Cited by 147 · see citing works
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“Our work parallels similar efforts in the adult fly brain 16 , the male VNC 14,15,19 and the larval nervous system 50 .”
InfluentialSynaptic architecture of leg and wing premotor control networks in Drosophila
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Cheong, H. S., Eichler, K., Stürner, T., Asinof, S. K., Champion, A. S., Marin, E. C., Oram, T. B., Sumathipala, M., Venkatasubramanian, L., Namiki, S., et al. (2026) · eLife · doi:10.7554/elife.96084 · Cited by 54 · see citing works
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Dorkenwald, S., Schneider-Mizell, C. M., Brittain, D., Halageri, A., Jordan, C., Kemnitz, N., Castro, M. A., Silversmith, W., Maitin-Shephard, J., Troidl, J., et al. (2023) · doi:10.1101/2023.07.26.550598 · Cited by 79 · see citing works
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Self-citation
- Authors
- Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Januszewski, M., Lu, Z., Marin, E. C., Preibisch, S., Xu, C. S., Bogovic, J., Champion, A. S., Cheong, H. S., Costa, M., Eichler, K., Katz, W., Knecht, C., Li, F., Morris, B. J., Ordish, C., Rivlin, P. K., Schlegel, P., Shinomiya, K., Stürner, T., Zhao, T., Badalamente, G., Bailey, D., Brooks, P., Canino, B. S., Clements, J., Cook, M., Duclos, O., Dunne, C. R., Fairbanks, K., Fang, S., Finley-May, S., Francis, A., George, R., Gkantia, M., Harrington, K., Hopkins, G. P., Hsu, J., Hubbard, P. M., Javier, A., Kainmueller, D., Korff, W., Kovalyak, J., Krzemiński, D., Lauchie, S. A., Lohff, A., Maldonado, C., Manley, E. A., Mooney, C., Neace, E., Nichols, M., Ogundeyi, O., Okeoma, N., Paterson, T., Phillips, E., Phillips, E. M., Ribeiro, C., Ryan, S. M., Rymer, J. T., Scott, A. K., Scott, A. L., Shepherd, D., Shinomiya, A., Smith, C., Smith, N., Suleiman, A., Takemura, S., Talebi, I., Tamimi, I. F., Trautman, E. T., Umayam, L., Walsh, J. J., Yang, T., Rubin, G. M., Scheffer, L. K., Funke, J., Saalfeld, S., Hess, H. F., Plaza, S. M., Card, G. M., Jefferis, G. S., & Berg, S.
- Affiliations
- Howard Hughes Medical Institute (US)
- University of Cambridge (GB)
- MRC Laboratory of Molecular Biology (GB)
- University of Southampton (GB)
- Corresponding author
- Card, Gwyneth M
- Jefferis, Gregory SXE
- Berg, Stuart
- ORCID
- Takemura, Shin-ya
- Hayworth, Kenneth J
- Huang, Gary B
- Januszewski, Michal
- Lu, Zhiyuan
- Marin, Elizabeth C
- Preibisch, Stephan
- Xu, C Shan
- Bogovic, John
- Champion, Andrew S
- Cheong, Han SJ
- Costa, Marta
- Eichler, Katharina
- Katz, William
- Knecht, Christopher
- Li, Feng
- Morris, Billy J
- Ordish, Christopher
- Rivlin, Patricia K
- Schlegel, Philipp
- Shinomiya, Kazunori
- Stürner, Tomke
- Zhao, Ting
- Badalamente, Griffin
- Bailey, Dennis
- Brooks, Paul
- Canino, Brandon S
- Clements, Jody
- Cook, Michael
- Duclos, Octave
- Dunne, Christopher R
- Fairbanks, Kelli
- Fang, Siqi
- Finley-May, Samantha
- Francis, Audrey
- George, Reed
- Gkantia, Marina
- Harrington, Kyle
- Hopkins, Gary Patrick
- Hsu, Joseph
- Hubbard, Philip M
- Javier, Alexandre
- Kainmueller, Dagmar
- Korff, Wyatt
- Kovalyak, Julie
- Krzemiński, Dominik
- Lauchie, Shirley A
- Lohff, Alanna
- Maldonado, Charli
- Manley, Emily A
- Mooney, Caroline
- Neace, Erika
- Ogundeyi, Omotara
- Okeoma, Nneoma
- Paterson, Tyler
- Phillips, Elliott
- Phillips, Emily M
- Ribeiro, Caitlin
- Ryan, Sean M
- Rymer, Jon Thomson
- Scott, Anne K
- Scott, Ashley L
- Shepherd, David
- Shinomiya, Aya
- Smith, Claire
- Smith, Natalie
- Suleiman, Alia
- Takemura, Satoko
- Talebi, Iris
- Tamimi, Imaan FM
- Trautman, Eric T
- Umayam, Lowell
- Walsh, John J
- Yang, Tansy
- Rubin, Gerald M
- Scheffer, Louis K
- Funke, Jan
- Saalfeld, Stephan
- Hess, Harald F
- Plaza, Stephen M
- Card, Gwyneth M
- Jefferis, Gregory SXE
- Berg, Stuart
- Venue
- bioRxiv (Cold Spring Harbor Laboratory)
- Publisher
- openRxiv
- Published
- 2023-06-06
- OpenAlex
- W4379522557
- Cited by
- 74
- References
- 25
- Citations by year
- 2026: 4 · 2025: 23 · 2024: 35 · 2023: 11 · 2020: 1
- Type
- posted content
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by
- Locations
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- MDC Repository (Max-Delbrueck-Center for Molecular Medicine) (submittedVersion)
- Funders
- Howard Hughes Medical Institute
- Wellcome Trust (221300/Z/20/Z, 220343/Z/20/Z)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neurobiology and Insect Physiology Research
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Cell Image Analysis Techniques
- Keywords
- ventral nerve cord, Drosophila connectome, neuronal circuit mapping, motor neurons, synaptic connectivity, electron microscopy reconstruction, neural circuits, insect nervous system
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