Palsson, Bernhard Ø.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Wang, M., Carver, J. J., Phelan, V. V., Sanchez, L. M., Garg, N., Peng, Y., Nguyen, D. D., Watrous, J., Kapono, C. A., Luzzatto-Knaan, T., et al. (2016) · Nature Biotechnology

Metabolomics and Mass Spectrometry StudiesMass Spectrometry Techniques and Applications

Cited by 4,629

What is flux balance analysis?

Orth, J. D., Thiele, I., & Palsson, B. Ø. (2010) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 3,903

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Schellenberger, J., Que, R., Fleming, R. M. T., Thiele, I., Orth, J. D., Feist, A. M., Zielinski, D. C., Bordbar, A., Lewis, N. E., Rahmanian, S., et al. (2011) · Nature Protocols

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 1,835

A protocol for generating a high-quality genome-scale metabolic reconstruction

Thiele, I., & Palsson, B. Ø. (2010) · Nature Protocols

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 1,789

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Duarte, N. C., Becker, S. A., Jamshidi, N., Thiele, I., Mo, M. L., Vo, T. D., Srivas, R., & Palsson, B. Ø. (2007) · Proceedings of the National Academy of Sciences

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 1,374

Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network

Förster, J., Famili, I., Fu, P., Palsson, B. Ø., & Nielsen, J. (2003) · Genome Research

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 1,069

A community-driven global reconstruction of human metabolism

Thiele, I., Swainston, N., Fleming, R. M. T., Hoppe, A., Sahoo, S., Aurich, M. K., Haraldsdottir, H., Mo, M. L., Rolfsson, O., Stobbe, M. D., et al. (2013) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 1,019

A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011

Orth, J. D., Conrad, T. M., Na, J., Lerman, J. A., Nam, H., Feist, A. M., & Palsson, B. Ø. (2011) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 1,006

Network-based prediction of human tissue-specific metabolism

Shlomi, T., Cabili, M. N., Herrgård, M. J., Palsson, B. Ø., & Ruppin, E. (2008) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 637

Systems Biology: Properties of Reconstructed Networks

Palsson, B. Ø. (2006) · Cambridge University Press eBooks

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 617

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

Herrgård, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Blüthgen, N., Borger, S., Costenoble, R., Heinemann, M., et al. (2008) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 588

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

Feist, A. M., & Palsson, B. Ø. (2008) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 545

Genome‐scale models of metabolism and gene expression extend and refine growth phenotype prediction

O'Brien, E. J., Lerman, J. A., Chang, R. L., Hyduke, D. R., & Palsson, B. Ø. (2013) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 471

Metabolic modelling of microbes: the flux‐balance approach

Edwards, J. S., Covert, M., & Palsson, B. (2002) · Environmental Microbiology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 365

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity

Bosi, E., Monk, J. M., Aziz, R. K., Fondi, M., Nizet, V., & Palsson, B. Ø. (2016) · Proceedings of the National Academy of Sciences

Microbial Metabolic Engineering and BioproductionAntimicrobial Resistance in Staphylococcus

Cited by 266

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

Fong, S. S., Joyce, A. R., & Palsson, B. Ø. (2005) · Genome Research

Evolution and Genetic DynamicsMicrobial Metabolic Engineering and Bioproduction

Cited by 265

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

Conrad, T. M., Frazier, M., Joyce, A. R., Cho, B.-K., Knight, E. M., Lewis, N. E., Landick, R., & Palsson, B. Ø. (2010) · Proceedings of the National Academy of Sciences

Bacterial Genetics and BiotechnologyEvolution and Genetic Dynamics

Cited by 241

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli

Feist, A. M., Zielinski, D. C., Orth, J. D., Schellenberger, J., Herrgard, M. J., & Palsson, B. Ø. (2010) · Metabolic Engineering

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 238

Systems Biology: Constraint-based Reconstruction and Analysis

Palsson, B. Ø. (2015) · Cambridge University Press eBooks

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 210

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

Thiele, I., Jamshidi, N., Fleming, R. M. T., & Palsson, B. Ø. (2009) · PLoS Computational Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 182

Formulating genome‐scale kinetic models in the post‐genome era

Jamshidi, N., & Palsson, B. Ø. (2008) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 180

The challenges of integrating multi-omic data sets

Palsson, B., & Zengler, K. (2010) · Nature Chemical Biology

Bioinformatics and Genomic NetworksInterdisciplinary Research and Collaboration

Cited by 178

High-density algal photobioreactors using light-emitting diodes

Lee, C., & Palsson, B. Ø. (1994) · Biotechnology and Bioengineering

Algal biology and biofuel productionFluid Dynamics and Mixing

Cited by 177

Maximizing Biomass Productivity and Cell Density of Chlorella Vulgaris by Using Light-Emitting Diode-Based Photobioreactor

Fu, W., Gudmundsson, O., Feist, A. M., Herjolfsson, G., Brynjolfsson, S., & Palsson, B. Ø. (2012) · Journal of Biotechnology

Algal biology and biofuel productionMicrobial Metabolic Engineering and Bioproduction

Cited by 170