Huang, Kerwyn Casey

A single-cell transcriptomic atlas characterizes ageing tissues in the mouse

The Tabula Muris Consortium, Almanzar, N., Antony, J., Baghel, A. S., Bakerman, I., Bansal, I., Barres, B. A., Beachy, P. A., Berdnik, D., Bilen, B., et al. (2020) · Nature

Single-cell and spatial transcriptomicsGenetics, Aging, and Longevity in Model Organisms

Cited by 1,247

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

The Tabula Sapiens Consortium*, Jones, R. C., Karkanias, J., Krasnow, M. A., Pisco, A. O., Quake, S. R., Salzman, J., Yosef, N., Bulthaup, B., Brown, P., et al. (2022) · Science

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 1,056

The gut microbiome: connecting spatial organization to function

Tropini, C., Earle, K. A., Huang, K. C., & Sonnenburg, J. L. (2017) · Cell Host & Microbe

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 685

Ageing hallmarks exhibit organ-specific temporal signatures

Schaum, N., Lehallier, B., Hahn, O., Pálovics, R., Hosseinzadeh, S., Lee, S. E., Sit, R., Lee, D. P., Losada, P. M., Zardeneta, M. E., et al. (2020) · Nature

Genetics, Aging, and Longevity in Model OrganismsSingle-cell and spatial transcriptomics

Cited by 671

A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection

Jacobson, A., Lam, L., Rajendram, M., Tamburini, F., Honeycutt, J., Pham, T., Van Treuren, W., Pruss, K., Stabler, S. R., Lugo, K., et al. (2018) · Cell Host & Microbe

Gut microbiota and healthEscherichia coli research studies

Cited by 507

Profiling the human intestinal environment under physiological conditions

Shalon, D., Culver, R. N., Grembi, J. A., Folz, J., Treit, P. V., Shi, H., Rosenberger, F. A., Dethlefsen, L., Meng, X., Yaffe, E., et al. (2023) · Nature

Gut microbiota and healthGastrointestinal motility and disorders

Cited by 484

Quantitative imaging of gut microbiota spatial organization

Earle, K. A., Billings, G., Sigal, M., Lichtman, J. S., Hansson, G. C., Elias, J. E., Amieva, M. R., Huang, K. C., & Sonnenburg, J. L. (2015) · Cell Host & Microbe

Gut microbiota and healthCell Image Analysis Techniques

Cited by 433

Physical properties of the bacterial outer membrane

Sun, J., Rutherford, S. T., Silhavy, T. J., & Huang, K. C. (2022) · Nature Reviews Microbiology

Bacterial Genetics and BiotechnologyLipid Membrane Structure and Behavior

Cited by 404

Molecular hallmarks of heterochronic parabiosis at single-cell resolution

Pálovics, R., Keller, A., Schaum, N., Tan, W., Fehlmann, T., Borja, M., Kern, F., Bonanno, L., Calcuttawala, K., Webber, J., et al. (2022) · Nature

Genetics, Aging, and Longevity in Model OrganismsSingle-cell and spatial transcriptomics

Cited by 153

Human metabolome variation along the upper intestinal tract

Folz, J., Culver, R. N., Morales, J. M., Grembi, J., Triadafilopoulos, G., Relman, D. A., Huang, K. C., Shalon, D., & Fiehn, O. (2023) · Nature Metabolism

Metabolomics and Mass Spectrometry StudiesGut microbiota and health

Cited by 143

Cell types of origin of the cell-free transcriptome

Vorperian, S. K., Moufarrej, M. N., Tabula Sapiens Consortium, Overall Project Direction and Coordination, Jones, R. C., Karkanias, J., Krasnow, M., Pisco, A. O., Quake, S. R., Salzman, J., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 116

Decoupling of Rates of Protein Synthesis from Cell Expansion Leads to Supergrowth

Knapp, B. D., Odermatt, P., Rojas, E. R., Cheng, W., He, X., Huang, K. C., & Chang, F. (2019) · Cell Systems

RNA and protein synthesis mechanismsFungal and yeast genetics research

Cited by 68

Assembly of gut-derived bacterial communities follows “early-bird” resource utilization dynamics

Aranda-Díaz, A., Willis, L., Nguyen, T. H., Ho, P.-Y., Vila, J., Thomsen, T., Chavez, T., Yan, R., Yu, F. B., Neff, N., et al. (2023) · Cell Systems

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 35

The effect of microbial colonization on the host proteome varies by gastrointestinal location

Lichtman, J. S., Alsentzer, E., Jaffe, M., Sprockett, D., Masutani, E., Ikwa, E., Fragiadakis, G. K., Clifford, D., Huang, B. E., Sonnenburg, J. L., et al. (2016) · The ISME Journal

Gut microbiota and healthAdvanced Proteomics Techniques and Applications

Cited by 32

Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions

Shiver, A. L., Sun, J., Culver, R., Violette, A., Wynter, C., Nieckarz, M., Mattiello, S. P., Sekhon, P. K., Bottacini, F., Friess, L., et al. (2025) · Cell

Gut microbiota and healthProbiotics and Fermented Foods

Cited by 27

Chemoproteomic identification of a dipeptidyl peptidase 4 (DPP4) homolog in Bacteroides thetaiotaomicron important for envelope integrity and fitness

Keller, L., Nguyen, T., Liu, L., Lakemeyer, M., Gelsinger, D., Chanin, R., Ngo, N., Lum, K., Faucher, F., Ipock, P., et al. (2022) · Nature Chemical Biology

Bacterial Genetics and BiotechnologyGut microbiota and health

Cited by 25

Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron

Keller, L. J., Nguyen, T. H., Liu, L. J., Hurysz, B. M., Lakemeyer, M., Guerra, M., Gelsinger, D. J., Chanin, R., Ngo, N., Lum, K. M., et al. (2023) · Nature Chemical Biology

Bacterial Genetics and BiotechnologyGut microbiota and health

Cited by 24