Lundberg, Emma

Tissue-based map of the human proteome

Uhlén, M., Fagerberg, L., Hallström, B. M., Lindskog, C., Oksvold, P., Mardinoglu, A., Sivertsson, Å., Kampf, C., Sjöstedt, E., Asplund, A., et al. (2015) · Science

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 15,286

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

Fagerberg, L., Hallström, B. M., Oksvold, P., Kampf, C., Djureinovic, D., Odeberg, J., Habuka, M., Tahmasebpoor, S., Danielsson, A., Edlund, K., et al. (2014) · Molecular & Cellular Proteomics

Bioinformatics and Genomic NetworksGene expression and cancer classification

Cited by 3,665

A pathology atlas of the human cancer transcriptome

Uhlen, M., Zhang, C., Lee, S., Sjöstedt, E., Fagerberg, L., Bidkhori, G., Benfeitas, R., Arif, M., Liu, Z., Edfors, F., et al. (2017) · Science

Bioinformatics and Genomic NetworksGene expression and cancer classification

Cited by 3,371

A subcellular map of the human proteome

Thul, P. J., Åkesson, L., Wiking, M., Mahdessian, D., Geladaki, A., Ait Blal, H., Alm, T., Asplund, A., Björk, L., Breckels, L. M., et al. (2017) · Science

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 2,813

Towards a knowledge-based Human Protein Atlas

Uhlen, M., Oksvold, P., Fagerberg, L., Lundberg, E., Jonasson, K., Forsberg, M., Zwahlen, M., Kampf, C., Wester, K., Hober, S., et al. (2010) · Nature Biotechnology

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 2,440

The human cell atlas

Regev, A., Teichmann, S. A., Lander, E. S., Amit, I., Benoist, C., Birney, E., Bodenmiller, B., Campbell, P., Carninci, P., Clatworthy, M., et al. (2017) · eLife

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 2,232

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., et al. (2018) · Nature Chemical Biology

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 907

A proposal for validation of antibodies

Uhlen, M., Bandrowski, A., Carr, S., Edwards, A., Ellenberg, J., Lundberg, E., Rimm, D. L., Rodriguez, H., Hiltke, T., Snyder, M., et al. (2016) · Nature Methods

Monoclonal and Polyclonal Antibodies ResearchMolecular Biology Techniques and Applications

Cited by 626

Spatial proteomics: a powerful discovery tool for cell biology

Lundberg, E., & Borner, G. H. H. (2019) · Nature Reviews Molecular Cell Biology

Advanced Proteomics Techniques and ApplicationsBiotin and Related Studies

Cited by 591

Deep Visual Proteomics defines single-cell identity and heterogeneity

Mund, A., Coscia, F., Kriston, A., Hollandi, R., Kovács, F., Brunner, A.-D., Migh, E., Schweizer, L., Santos, A., Bzorek, M., et al. (2022) · Nature Biotechnology

Advanced Proteomics Techniques and ApplicationsSingle-cell and spatial transcriptomics

Cited by 562

The human secretome

Uhlén, M., Karlsson, M. J., Hober, A., Svensson, A.-S., Scheffel, J., Kotol, D., Zhong, W., Tebani, A., Strandberg, L., Edfors, F., et al. (2019) · Science Signaling

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 495

Gene‐specific correlation of RNA and protein levels in human cells and tissues

Edfors, F., Danielsson, F., Hallström, B. M., Käll, L., Lundberg, E., Pontén, F., Forsström, B., & Uhlén, M. (2016) · Molecular Systems Biology

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 493

The emerging landscape of spatial profiling technologies

Moffitt, J. R., Lundberg, E., & Heyn, H. (2022) · Nature Reviews Genetics

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 419

Defining the transcriptome and proteome in three functionally different human cell lines

Lundberg, E., Fagerberg, L., Klevebring, D., Matic, I., Geiger, T., Cox, J., Älgenäs, C., Lundeberg, J., Mann, M., & Uhlen, M. (2010) · Molecular Systems Biology

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 373

Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse

Geiger, T., Velic, A., Macek, B., Lundberg, E., Kampf, C., Nagaraj, N., Uhlen, M., Cox, J., & Mann, M. (2013) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 235

Xist ribonucleoproteins promote female sex-biased autoimmunity

Dou, D. R., Zhao, Y., Belk, J. A., Zhao, Y., Casey, K. M., Chen, D. C., Li, R., Yu, B., Srinivasan, S., Abe, B. T., et al. (2024) · Cell

Systemic Lupus Erythematosus ResearchGenetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities

Cited by 233

A global view of protein expression in human cells, tissues, and organs

Pontén, F., Gry, M., Fagerberg, L., Lundberg, E., Asplund, A., Berglund, L., Oksvold, P., Björling, E., Hober, S., Kampf, C., et al. (2009) · Molecular Systems Biology

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 222

A high-stringency blueprint of the human proteome

Adhikari, S., Nice, E. C., Deutsch, E. W., Lane, L., Omenn, G. S., Pennington, S. R., Paik, Y.-K., Overall, C. M., Corrales, F. J., Cristea, I. M., et al. (2020) · Nature Communications

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 210

A Protein Epitope Signature Tag (PrEST) Library Allows SILAC-based Absolute Quantification and Multiplexed Determination of Protein Copy Numbers in Cell Lines

Zeiler, M., Straube, W. L., Lundberg, E., Uhlen, M., & Mann, M. (2012) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 168

The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells

Melani, R. D., Gerbasi, V. R., Anderson, L. C., Sikora, J. W., Toby, T. K., Hutton, J. E., Butcher, D. S., Negrão, F., Seckler, H. S., Srzentić, K., et al. (2022) · Science

Advanced Proteomics Techniques and ApplicationsAdvanced Biosensing Techniques and Applications

Cited by 140

Analysis of the Human Protein Atlas Image Classification competition

Ouyang, W., Winsnes, C. F., Hjelmare, M., Cesnik, A. J., Åkesson, L., Xu, H., Sullivan, D. P., Dai, S., Lan, J., Jinmo, P., et al. (2019) · Nature Methods

Cell Image Analysis TechniquesMachine Learning in Bioinformatics

Cited by 131

Metrics for the Human Proteome Project 2013–2014 and Strategies for Finding Missing Proteins

Lane, L., Bairoch, A., Beavis, R. C., Deutsch, E. W., Gaudet, P., Lundberg, E., & Omenn, G. S. (2014) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 129

The folate-coupled enzyme MTHFD2 is a nuclear protein and promotes cell proliferation

Gustafsson Sheppard, N., Jarl, L., Mahadessian, D., Strittmatter, L., Schmidt, A., Madhusudan, N., Tegnér, J., Lundberg, E. K., Asplund, A., Jain, M., et al. (2015) · Scientific Reports

Folate and B Vitamins ResearchBiochemical and Molecular Research

Cited by 115

What Is Your Conceptual Definition of “Cell Type” in the Context of a Mature Organism?

Clevers, H., Rafelski, S., Elowitz, M. B., Klein, A., Shendure, J., Trapnell, C., Lein, E., Lundberg, E. K., Uhlén, M., Martinez-Arias, A., et al. (2017) · Cell Systems

Single-cell and spatial transcriptomicsDevelopmental Biology and Gene Regulation

Cited by 108