Chen, Jianxu

Understanding metric-related pitfalls in image analysis validation

Reinke, A., Tizabi, M. D., Baumgartner, M., Eisenmann, M., Heckmann-Nötzel, D., Kavur, A. E., Rädsch, T., Sudre, C. H., Acion, L., Antonelli, M., et al. (2024) · Nature Methods

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

Cited by 241

Integrated intracellular organization and its variations in human iPS cells

Viana, M. P., Chen, J., Knijnenburg, T. A., Vasan, R., Yan, C., Arakaki, J. E., Bailey, M., Berry, B., Borensztejn, A., Brown, E. M., et al. (2023) · Nature

Cell Image Analysis TechniquesPluripotent Stem Cells Research

Cited by 132

The Allen Cell and Structure Segmenter: a new open source toolkit for segmenting 3D intracellular structures in fluorescence microscopy images

Chen, J., Ding, L., Viana, M. P., Lee, H., Sluezwski, M. F., Morris, B., Hendershott, M. C., Yang, R., Mueller, I. A., & Rafelski, S. M. (2018) · bioRxiv (Cold Spring Harbor Laboratory)

Cell Image Analysis TechniquesMedical Image Segmentation Techniques

Cited by 99

Colony context and size-dependent compensation mechanisms give rise to variations in nuclear growth trajectories

Dixon, J. C., Frick, C. L., Leveille, C. L., Garrison, P., Lee, P. A., Mogre, S. S., Morris, B., Nivedita, N., Vasan, R., Chen, J., et al. (2024) · Cell Systems

Cell Image Analysis TechniquesGene Regulatory Network Analysis

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