Casadio, Rita

A large-scale evaluation of computational protein function prediction

Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., et al. (2013) · Nature Methods

Bioinformatics and Genomic NetworksMachine Learning in Bioinformatics

Cited by 1,028

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., et al. (2019) · Genome Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 452

INPS-MD: a web server to predict stability of protein variants from sequence and structure

Savojardo, C., Fariselli, P., Martelli, P. L., & Casadio, R. (2016) · Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 290

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information

Bartoli, L., Fariselli, P., Krogh, A., & Casadio, R. (2009) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 46

CoCoNat: a novel method based on deep learning for coiled-coil prediction

Madeo, G., Savojardo, C., Manfredi, M., Martelli, P. L., & Casadio, R. (2023) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 38

On the biases in predictions of protein stability changes upon variations: the INPS test case

Montanucci, L., Savojardo, C., Martelli, P. L., Casadio, R., & Fariselli, P. (2019) · Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 33