Luecken, Malte D.

Current best practices in single-cell RNA-seq analysis: a tutorial

Luecken, M. D., & Theis, F. J. (2019) · Molecular Systems Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,231

Benchmarking atlas-level data integration in single-cell genomics

Luecken, M. D., Büttner, M., Chaichoompu, K., Danese, A., Interlandi, M., Mueller, M. F., Strobl, D. C., Zappia, L., Dugas, M., Colomé-Tatché, M., et al. (2022) · Nature Methods

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 1,438

Mapping single-cell data to reference atlases by transfer learning

Lotfollahi, M., Naghipourfar, M., Luecken, M. D., Khajavi, M., Büttner, M., Wagenstetter, M., Avsec, Ž., Gayoso, A., Yosef, N., Interlandi, M., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 602

SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis

Wendisch, D., Dietrich, O., Mari, T., von Stillfried, S., Ibarra, I. L., Mittermaier, M., Mache, C., Chua, R. L., Knoll, R., Timm, S., et al. (2021) · Cell

COVID-19 Clinical Research StudiesInterstitial Lung Diseases and Idiopathic Pulmonary Fibrosis

Cited by 528

Multimodal single cell data integration challenge: results and lessons learned

Lance, C., Luecken, M. D., Burkhardt, D. B., Cannoodt, R., Rautenstrauch, P., Laddach, A., Ubingazhibov, A., Cao, Z.-J., Deng, K., Khan, S., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 81