Papenfuss, Anthony T.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

Broad Institute Genome Sequencing Platform, Mikkelsen, T. S., Broad Institute Whole Genome Assembly Team, Wakefield, M. J., Aken, B., Amemiya, C. T., Chang, J. L., Duke, S., Garber, M., Gentles, A. J., et al. (2007) · Nature

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 711

BET inhibitor resistance emerges from leukaemia stem cells

Fong, C. Y., Gilan, O., Lam, E. Y. N., Rubin, A. F., Ftouni, S., Tyler, D., Stanley, K., Sinha, D., Yeh, P., Morison, J., et al. (2015) · Nature

Protein Degradation and InhibitorsChromatin Remodeling and Cancer

Cited by 545

A statistical framework for analyzing deep mutational scanning data

Rubin, A. F., Gelman, H., Lucas, N., Bajjalieh, S. M., Papenfuss, A. T., Speed, T. P., & Fowler, D. M. (2017) · Genome Biology

CRISPR and Genetic EngineeringGenomics and Rare Diseases

Cited by 262

Complementarity and redundancy of IL-22-producing innate lymphoid cells

Rankin, L. C., Girard-Madoux, M. J. H., Seillet, C., Mielke, L. A., Kerdiles, Y., Fenis, A., Wieduwild, E., Putoczki, T., Mondot, S., Lantz, O., et al. (2016) · Nature Immunology

IL-33, ST2, and ILC PathwaysT-cell and B-cell Immunology

Cited by 249

The Architecture and Evolution of Cancer Neochromosomes

Garsed, D. W., Marshall, O. J., Corbin, V. D. A., Hsu, A., Di Stefano, L., Schröder, J., Li, J., Feng, Z.-P., Kim, B. W., Kowarsky, M., et al. (2014) · Cancer Cell

Genomic variations and chromosomal abnormalitiesSarcoma Diagnosis and Treatment

Cited by 194

Targeting histone acetylation dynamics and oncogenic transcription by catalytic P300/CBP inhibition

Hogg, S. J., Motorna, O., Cluse, L. A., Johanson, T. M., Coughlan, H. D., Raviram, R., Myers, R. M., Costacurta, M., Todorovski, I., Pijpers, L., et al. (2021) · Molecular Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 170

Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer

Merino, D., Weber, T. S., Serrano, A., Vaillant, F., Liu, K., Pal, B., Di Stefano, L., Schreuder, J., Lin, D., Chen, Y., et al. (2019) · Nature Communications

Cancer Genomics and DiagnosticsCancer Cells and Metastasis

Cited by 145

Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system

Belov, K., Sanderson, C. E., Deakin, J. E., Wong, E. S. W., Assange, D., McColl, K. A., Gout, A., de Bono, B., Barrow, A. D., Speed, T. P., et al. (2007) · Genome Research

Immune Response and InflammationGenomics and Phylogenetic Studies

Cited by 116

MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer

Cipponi, A., Goode, D. L., Bedo, J., McCabe, M. J., Pajic, M., Croucher, D. R., Rajal, A. G., Junankar, S. R., Saunders, D. N., Lobachevsky, P., et al. (2020) · Science

PI3K/AKT/mTOR signaling in cancerEvolution and Genetic Dynamics

Cited by 103

CD8+ T Cells from a Novel T Cell Receptor Transgenic Mouse Induce Liver-Stage Immunity That Can Be Boosted by Blood-Stage Infection in Rodent Malaria

Lau, L. S., Fernandez-Ruiz, D., Mollard, V., Sturm, A., Neller, M. A., Cozijnsen, A., Gregory, J. L., Davey, G. M., Jones, C. M., Lin, Y.-H., et al. (2014) · PLoS Pathogens

Malaria Research and ControlImmunotherapy and Immune Responses

Cited by 99

A G358S mutation in the Plasmodium falciparum Na+ pump PfATP4 confers clinically-relevant resistance to cipargamin

Qiu, D., Pei, J. V., Rosling, J. E. O., Thathy, V., Li, D., Xue, Y., Tanner, J. D., Penington, J. S., Aw, Y. T. V., Aw, J. Y. H., et al. (2022) · Nature Communications

Malaria Research and ControlErythrocyte Function and Pathophysiology

Cited by 70

ProteinDJ : A high‐performance and modular protein design pipeline

Silke, D., Iskander, J., Pan, J., Thompson, A. P., Papenfuss, A. T., Lucet, I. S., & Hardy, J. M. (2026) · Protein Science

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 6