Sánchez, Benjamín J.

MEMOTE for standardized genome-scale metabolic model testing

Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., et al. (2020) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 509

Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

Sánchez, B. J., Zhang, C., Nilsson, A., Lahtvee, P., Kerkhoven, E. J., & Nielsen, J. (2017) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 466

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Wang, H., Marcišauskas, S., Sánchez, B. J., Domenzain, I., Hermansson, D., Agren, R., Nielsen, J., & Kerkhoven, E. J. (2018) · PLOS Computational Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 381

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast

Lahtvee, P.-J., Sánchez, B. J., Smialowska, A., Kasvandik, S., Elsemman, I. E., Gatto, F., & Nielsen, J. (2017) · Cell Systems

RNA and protein synthesis mechanismsFungal and yeast genetics research

Cited by 193

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Domenzain, I., Sánchez, B., Anton, M., Kerkhoven, E. J., Millán-Oropeza, A., Henry, C., Siewers, V., Morrissey, J. P., Sonnenschein, N., & Nielsen, J. (2021) · Nature Communications

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 158

Genome scale models of yeast: towards standardized evaluation and consistent omic integration

Sánchez, B. J., & Nielsen, J. (2015) · Integrative Biology

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 75

Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae

Sánchez, B. J., Lahtvee, P., Campbell, K., Kasvandik, S., Yu, R., Domenzain, I., Zelezniak, A., & Nielsen, J. (2021) · PROTEOMICS

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 18