Abdennur, Nezar

Formation of chromosomal domains by loop extrusion

Fudenberg, G., Imakaev, M., Lu, C., Goloborodko, A., Abdennur, N., & Mirny, L. A. (2016) · Cell Reports

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 2,003

Cooler: scalable storage for Hi-C data and other genomically labeled arrays

Abdennur, N., & Mirny, L. A. (2020) · Bioinformatics

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 1,759

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization

Nora, E. P., Goloborodko, A., Valton, A.-L., Gibcus, J. H., Uebersohn, A., Abdennur, N., Dekker, J., Mirny, L. A., & Bruneau, B. G. (2017) · Cell

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 1,709

FTO Obesity Variant Circuitry and Adipocyte Browning in Humans

Claussnitzer, M., Dankel, S. N., Kim, K.-H., Quon, G., Meuleman, W., Haugen, C., Glunk, V., Sousa, I. S., Beaudry, J. L., Puviindran, V., et al. (2015) · New England Journal of Medicine

Adipose Tissue and MetabolismGenetic Associations and Epidemiology

Cited by 1,332

Two independent modes of chromatin organization revealed by cohesin removal

Schwarzer, W., Abdennur, N., Goloborodko, A., Pekowska, A., Fudenberg, G., Loe-Mie, Y., Fonseca, N. A., Huber, W., Haering, C. H., Mirny, L., et al. (2017) · Nature

Genomics and Chromatin DynamicsNuclear Structure and Function

Cited by 1,196

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

Flyamer, I. M., Gassler, J., Imakaev, M., Brandão, H. B., Ulianov, S. V., Abdennur, N., Razin, S. V., Mirny, L. A., & Tachibana-Konwalski, K. (2017) · Nature

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 753

Ultrastructural Details of Mammalian Chromosome Architecture

Krietenstein, N., Abraham, S., Venev, S. V., Abdennur, N., Gibcus, J., Hsieh, T.-H. S., Parsi, K. M., Yang, L., Maehr, R., Mirny, L. A., et al. (2020) · Molecular Cell

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 622

Cooltools: Enabling high-resolution Hi-C analysis in Python

Open2C, Abdennur, N., Abraham, S., Fudenberg, G., Flyamer, I. M., Galitsyna, A. A., Goloborodko, A., Imakaev, M., Oksuz, B. A., Venev, S. V., et al. (2024) · PLOS Computational Biology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 313

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure

Ulianov, S. V., Galitsyna, A. A., Flyamer, I. M., Golov, A. K., Khrameeva, E. E., Imakaev, M. V., Abdennur, N. A., Gelfand, M. S., Gavrilov, A. A., & Razin, S. V. (2017) · Epigenetics & Chromatin

Genomics and Chromatin DynamicsHemoglobinopathies and Related Disorders

Cited by 19