Zhang, Michael Q.

Integrative analysis of 111 reference human epigenomes

Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., et al. (2015) · Nature

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

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Combinatorial patterns of histone acetylations and methylations in the human genome

Wang, Z., Zang, C., Rosenfeld, J. A., Schones, D. E., Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Peng, W., Zhang, M. Q., et al. (2008) · Nature Genetics

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

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NONCODE 2016: an informative and valuable data source of long non-coding RNAs

Zhao, Y., Li, H., Fang, S., Kang, Y., wu, W., Hao, Y., Li, Z., Bu, D., Sun, N., Zhang, M. Q., et al. (2016) · Nucleic Acids Research

Cancer-related molecular mechanisms researchGenomics and Phylogenetic Studies

Cited by 643

Direct coupling of the cell cycle and cell death machinery by E2F

Nahle, Z., Polakoff, J., Davuluri, R. V., McCurrach, M. E., Jacobson, M. D., Narita, M., Zhang, M. Q., Lazebnik, Y., Bar-Sagi, D., & Lowe, S. W. (2002) · Nature Cell Biology

Cancer-related Molecular PathwaysCell death mechanisms and regulation

Cited by 421

Dissecting the Unique Role of the Retinoblastoma Tumor Suppressor during Cellular Senescence

Chicas, A., Wang, X., Zhang, C., McCurrach, M., Zhao, Z., Mert, O., Dickins, R. A., Narita, M., Zhang, M., & Lowe, S. W. (2010) · Cancer Cell

Telomeres, Telomerase, and SenescenceCancer-related Molecular Pathways

Cited by 388

HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism

Weyn-Vanhentenryck, S. M., Mele, A., Yan, Q., Sun, S., Farny, N., Zhang, Z., Xue, C., Herre, M., Silver, P. A., Zhang, M. Q., et al. (2014) · Cell Reports

RNA Research and SplicingGenetics and Neurodevelopmental Disorders

Cited by 333

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2

Zhang, C., Zhang, Z., Castle, J., Sun, S., Johnson, J., Krainer, A. R., & Zhang, M. Q. (2008) · Genes & Development

RNA Research and SplicingRNA regulation and disease

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Genome-wide map of regulatory interactions in the human genome

Heidari, N., Phanstiel, D. H., He, C., Grubert, F., Jahanbani, F., Kasowski, M., Zhang, M. Q., & Snyder, M. P. (2014) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 278

CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data

Guo, W., Zhu, P., Pellegrini, M., Zhang, M. Q., Wang, X., & Ni, Z. (2018) · Bioinformatics

Epigenetics and DNA MethylationGenomics and Phylogenetic Studies

Cited by 198

Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer

Tong, X., Patel, A. S., Kim, E., Li, H., Chen, Y., Li, S., Liu, S., Dilly, J., Kapner, K. S., Zhang, N., et al. (2024) · Cancer Cell

Lung Cancer Treatments and MutationsCancer Cells and Metastasis

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CD36-dependent Regulation of Muscle FoxO1 and PDK4 in the PPARδ/β-mediated Adaptation to Metabolic Stress

Nahlé, Z., Hsieh, M., Pietka, T., Coburn, C. T., Grimaldi, P. A., Zhang, M. Q., Das, D., & Abumrad, N. A. (2008) · Journal of Biological Chemistry

Peroxisome Proliferator-Activated ReceptorsFOXO transcription factor regulation

Cited by 122

CDKN2A/p16 Inactivation Mechanisms and Their Relationship to Smoke Exposure and Molecular Features in Non–Small-Cell Lung Cancer

Tam, K. W., Zhang, W., Soh, J., Stastny, V., Chen, M., Sun, H., Thu, K., Rios, J. J., Yang, C., Marconett, C. N., et al. (2013) · Journal of Thoracic Oncology

Lung Cancer Treatments and MutationsLung Cancer Research Studies

Cited by 109

SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles

Xie, P., Gao, M., Wang, C., Zhang, J., Noel, P., Yang, C., Von Hoff, D., Han, H., Zhang, M. Q., & Lin, W. (2019) · Nucleic Acids Research

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 74

Accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features

Abbas, A., Chandratre, K., Gao, Y., Yuan, J., Zhang, M. Q., & Mani, R. S. (2022) · Genome biology

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

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ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features

Abbas, A., Chandratre, K., Gao, Y., Yuan, J., Zhang, M. Q., & Mani, R. S. (2024) · Genome Biology

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

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