Manke, Thomas

deepTools2: a next generation web server for deep-sequencing data analysis

Ramírez, F., Ryan, D. P., Grüning, B., Bhardwaj, V., Kilpert, F., Richter, A. S., Heyne, S., Dündar, F., & Manke, T. (2016) · Nucleic Acids Research

Genomics and Phylogenetic StudiesGenomics and Chromatin Dynamics

Cited by 8,096

deepTools: a flexible platform for exploring deep-sequencing data

Ramírez, F., Dündar, F., Diehl, S., Grüning, B. A., & Manke, T. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesGenetics, Bioinformatics, and Biomedical Research

Cited by 3,738

Suv39h-Dependent H3K9me3 Marks Intact Retrotransposons and Silences LINE Elements in Mouse Embryonic Stem Cells

Bulut-Karslioglu, A., De La Rosa-Velázquez, I. A., Ramirez, F., Barenboim, M., Onishi-Seebacher, M., Arand, J., Galán, C., Winter, G. E., Engist, B., Gerle, B., et al. (2014) · Molecular Cell

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 368

Phase structure and critical temperature of two-flavor QCD with a renormalization group improved gauge action and clover improved Wilson quark action

Ali Khan, A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., et al. (2000) · Physical Review D

Quantum Chromodynamics and Particle InteractionsHigh-Energy Particle Collisions Research

Cited by 158

PASTAA: identifying transcription factors associated with sets of co-regulated genes

Roider, H. G., Manke, T., O'Keeffe, S., Vingron, M., & Haas, S. A. (2009) · Bioinformatics

Genomics and Chromatin DynamicsBioinformatics and Genomic Networks

Cited by 154

A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

DEEP Consortium, Salhab, A., Nordström, K., Gasparoni, G., Kattler, K., Ebert, P., Ramirez, F., Arrigoni, L., Müller, F., Polansky, J. K., et al. (2018) · Genome Biology

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 115

RNA damage compartmentalization by DHX9 stress granules

Zhou, Y., Panhale, A., Shvedunova, M., Balan, M., Gomez-Auli, A., Holz, H., Seyfferth, J., Helmstädter, M., Kayser, S., Zhao, Y., et al. (2024) · Cell

RNA Research and SplicingRNA and protein synthesis mechanisms

Cited by 83

Functional multi-organelle units control inflammatory lipid metabolism of macrophages

Zimmermann, J. A., Lucht, K., Stecher, M., Badhan, C., Glaser, K. M., Epple, M. W., Koch, L. R., Deboutte, W., Manke, T., Ebnet, K., et al. (2024) · Nature Cell Biology

Lipid metabolism and biosynthesisCancer, Lipids, and Metabolism

Cited by 79