Scheffler, Konrad

Detecting Individual Sites Subject to Episodic Diversifying Selection

Murrell, B., Wertheim, J. O., Moola, S., Weighill, T., Scheffler, K., & Kosakovsky Pond, S. L. (2012) · PLoS Genetics

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 1,811

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

Wertheim, J. O., Murrell, B., Smith, M. D., Kosakovsky Pond, S. L., & Scheffler, K. (2015) · Molecular Biology and Evolution

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 778

A random effects branch-site model for detecting episodic diversifying selection

Kosakovsky Pond, S. L., Murrell, B., Fourment, M., Frost, S. D. W., Delport, W., & Scheffler, K. (2011) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 400

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions

Dolzhenko, E., Deshpande, V., Schlesinger, F., Krusche, P., Petrovski, R., Chen, S., Emig-Agius, D., Gross, A., Narzisi, G., Bowman, B., et al. (2019) · Bioinformatics

Genomics and Phylogenetic StudiesGenomics and Rare Diseases

Cited by 394

Timing the SARS-CoV-2 index case in Hubei Province

Pekar, J., Worobey, M., Moshiri, N., Scheffler, K., & Wertheim, J. O. (2021) · Science

SARS-CoV-2 and COVID-19 ResearchCOVID-19 epidemiological studies

Cited by 156

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

Kosakovsky Pond, S., Delport, W., Muse, S. V., & Scheffler, K. (2010) · PLoS ONE

RNA and protein synthesis mechanismsGenomics and Phylogenetic Studies

Cited by 51

On the validity of evolutionary models with site-specific parameters

Scheffler, K., Murrell, B., & Kosakovsky Pond, S. L. (2014) · PLoS ONE

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 16