Beiko, Robert G

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Langille, M. G. I., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., Clemente, J. C., Burkepile, D. E., Vega Thurber, R. L., Knight, R., et al. (2013) · Nature Biotechnology

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

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CARD 2020: Antibiotic Resistome Surveillance with the Comprehensive Antibiotic Resistance Database

Alcock, B. P., Raphenya, A. R., Lau, T. T. Y., Tsang, K. K., Bouchard, M., Edalatmand, A., Huynh, W., Nguyen, A.-L. V., Cheng, A. A., Liu, S., et al. (2019) · Nucleic Acids Research

Antibiotic Resistance in BacteriaAntibiotic Use and Resistance

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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

Alcock, B. P., Huynh, W., Chalil, R., Smith, K. W., Raphenya, A. R., Wlodarski, M. A., Edalatmand, A., Petkau, A., Syed, S. A., Tsang, K. K., et al. (2023) · Nucleic Acids Research

Antibiotic Resistance in BacteriaAntibiotic Use and Resistance

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Highways of gene sharing in prokaryotes

Beiko, R. G., Harlow, T. J., & Ragan, M. A. (2005) · Proceedings of the National Academy of Sciences

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

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Microbial shifts in the aging mouse gut

Langille, M. G., Meehan, C. J., Koenig, J. E., Dhanani, A. S., Rose, R. A., Howlett, S. E., & Beiko, R. G. (2014) · Microbiome

Gut microbiota and healthGenetics, Aging, and Longevity in Model Organisms

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Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

Curtis, B. A., Tanifuji, G., Burki, F., Gruber, A., Irimia, M., Maruyama, S., Arias, M. C., Ball, S. G., Gile, G. H., Hirakawa, Y., et al. (2012) · Nature

Protist diversity and phylogenyChromosomal and Genetic Variations

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Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic islands

Maguire, F., Jia, B., Gray, K. L., Lau, W. Y. V., Beiko, R. G., & Brinkman, F. S. L. (2020) · Microbial Genomics

Genomics and Phylogenetic StudiesAntibiotic Resistance in Bacteria

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