Boyeau, Pierre

A Python library for probabilistic analysis of single-cell omics data

Gayoso, A., Lopez, R., Xing, G., Boyeau, P., Valiollah Pour Amiri, V., Hong, J., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 789

Predicting cellular responses to complex perturbations in high‐throughput screens

Lotfollahi, M., Klimovskaia Susmelj, A., De Donno, C., Hetzel, L., Ji, Y., Ibarra, I. L., Srivatsan, S. R., Naghipourfar, M., Daza, R. M., Martin, B., et al. (2023) · Molecular Systems Biology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 307

DestVI identifies continuums of cell types in spatial transcriptomics data

Lopez, R., Li, B., Keren-Shaul, H., Boyeau, P., Kedmi, M., Pilzer, D., Jelinski, A., Yofe, I., David, E., Wagner, A., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 276

Deep generative modeling of sample-level heterogeneity in single-cell genomics

Boyeau, P., Hong, J., Gayoso, A., Kim, M., McFaline-Figueroa, J. L., Jordan, M. I., Azizi, E., Ergen, C., & Yosef, N. (2025) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 55

CherryML: Scalable Maximum Likelihood Estimation of Phylogenetic Models

Prillo, S., Deng, Y., Boyeau, P., Li, X., Chen, P.-Y., & Song, Y. S. (2022) · Nature Methods

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 13

CherryML: scalable maximum likelihood estimation of phylogenetic models

Prillo, S., Deng, Y., Boyeau, P., Li, X., Chen, P.-Y., & Song, Y. S. (2023) · Nature Methods

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 13

AutoEval Done Right: Using Synthetic Data for Model Evaluation

Boyeau, P., Angelopoulos, A. N., Yosef, N., Malik, J., & Jordan, M. I. (2024) · arXiv

Machine Learning and Data ClassificationMachine Learning and Algorithms

Cited by 1