Oshlack, Alicia

A scaling normalization method for differential expression analysis of RNA-seq data

Robinson, M. D., & Oshlack, A. (2010) · Genome Biology

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 7,876

Gene ontology analysis for RNA-seq: accounting for selection bias

Young, M. D., Wakefield, M. J., Smyth, G. K., & Oshlack, A. (2010) · Genome Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 7,107

Clustering trees: a visualization for evaluating clusterings at multiple resolutions

Zappia, L., & Oshlack, A. (2018) · GigaScience

Advanced Clustering Algorithms ResearchData Visualization and Analytics

Cited by 1,064

A comparison of background correction methods for two-colour microarrays

Ritchie, M. E., Silver, J., Oshlack, A., Holmes, M., Diyagama, D., Holloway, A., & Smyth, G. K. (2007) · Bioinformatics

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 907

Splatter: simulation of single-cell RNA sequencing data

Zappia, L., Phipson, B., & Oshlack, A. (2017) · Genome Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 905

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips

Maksimovic, J., Gordon, L., & Oshlack, A. (2012) · Genome Biology

Epigenetics and DNA MethylationGene expression and cancer classification

Cited by 826

Transcript length bias in RNA-seq data confounds systems biology

Oshlack, A., & Wakefield, M. J. (2009) · Biology Direct

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 497

Optimizing the noise versus bias trade-off for Illumina Whole Genome Expression Beadchips

Shi, W., Oshlack, A., & Smyth, G. K. (2010) · Nucleic Acids Research

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 225

Gene length and detection bias in single cell RNA sequencing protocols

Phipson, B., Zappia, L., & Oshlack, A. (2017) · F1000Research

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 74

Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes

Oshlack, A., Emslie, D., Corcoran, L. M., & Smyth, G. K. (2007) · Genome biology

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 69

Order Matters: Ambient RNA correction confounds doublet detection in single-cell RNA sequencing

Meier, M., Howitt, G., Grima, C. V., Dixit, G., King, H., Gubbels, L., Levi, E., Davies, K., Shanthikumar, S., Neeland, M. R., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory)

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 0