Loose, Matthew

Nanopore sequencing and assembly of a human genome with ultra-long reads

Jain, M., Koren, S., Miga, K. H., Quick, J., Rand, A. C., Sasani, T. A., Tyson, J. R., Beggs, A. D., Dilthey, A. T., Fiddes, I. T., et al. (2018) · Nature Biotechnology

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 1,892

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Quick, J., Grubaugh, N. D., Pullan, S. T., Claro, I. M., Smith, A. D., Gangavarapu, K., Oliveira, G., Robles-Sikisaka, R., Rogers, T. F., Beutler, N. A., et al. (2017) · Nature Protocols

Mosquito-borne diseases and controlGenomics and Phylogenetic Studies

Cited by 1,190

SARS-CoV-2 evolution during treatment of chronic infection

Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., Hosmillo, M., Rees-Spear, C., Mlcochova, P., Lumb, I. U., et al. (2021) · Nature

SARS-CoV-2 and COVID-19 ResearchCOVID-19 Clinical Research Studies

Cited by 1,097

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

Volz, E., Hill, V., McCrone, J. T., Price, A., Jorgensen, D., O’Toole, Á., Southgate, J., Johnson, R., Jackson, B., Nascimento, F. F., et al. (2021) · Cell

SARS-CoV-2 and COVID-19 ResearchEvolution and Genetic Dynamics

Cited by 1,006

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

Willett, B. J., Grove, J., MacLean, O. A., Wilkie, C., De Lorenzo, G., Furnon, W., Cantoni, D., Scott, S., Logan, N., Ashraf, S., et al. (2022) · Nature Microbiology

SARS-CoV-2 and COVID-19 ResearchCOVID-19 Clinical Research Studies

Cited by 785

Telomere-to-telomere assembly of a complete human X chromosome

Miga, K. H., Koren, S., Rhie, A., Vollger, M. R., Gershman, A., Bzikadze, A., Brooks, S., Howe, E., Porubsky, D., Logsdon, G. A., et al. (2020) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 765

Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R. P., Walls, A. C., Kemp, S. A., Bassi, J., Pinto, D., Silacci-Fregni, C., et al. (2021) · Nature

SARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections Studies

Cited by 728

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

Faria, N. R., Quick, J., Claro, I. M., Thézé, J., de Jesus, J. G., Giovanetti, M., Kraemer, M. U. G., Hill, S. C., Black, A., da Costa, A. C., et al. (2017) · Nature

Mosquito-borne diseases and controlViral Infections and Vectors

Cited by 616

Real-time selective sequencing using nanopore technology

Loose, M., Malla, S., & Stout, M. (2016) · Nature Methods

Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport Studies

Cited by 399

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files

Payne, A., Holmes, N., Rakyan, V., & Loose, M. (2019) · Bioinformatics

Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport Studies

Cited by 326

Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

Graham, M. S., Sudre, C. H., May, A., Antonelli, M., Murray, B., Varsavsky, T., Kläser, K., Canas, L. S., Molteni, E., Modat, M., et al. (2021) · The Lancet Public Health

SARS-CoV-2 and COVID-19 ResearchCOVID-19 epidemiological studies

Cited by 304

Genetic regulatory networks programming hematopoietic stem cells and erythroid lineage specification

Swiers, G., Patient, R., & Loose, M. (2006) · Developmental Biology

Gene Regulatory Network AnalysisHematopoietic Stem Cell Transplantation

Cited by 168

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry

Jain, M., Tyson, J. R., Loose, M., Ip, C. L. C., Eccles, D. A., O'Grady, J., Malla, S., Leggett, R. M., Wallerman, O., Jansen, H. J., et al. (2017) · F1000Research

Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport Studies

Cited by 140

A conserved mechanism for vertebrate mesoderm specification in urodele amphibians and mammals

Swiers, G., Chen, Y.-H., Johnson, A. D., & Loose, M. (2010) · Developmental Biology

Developmental Biology and Gene RegulationPluripotent Stem Cells Research

Cited by 35